Hb_108576_020

Information

Type -
Description -
Location Contig108576: 12637-14339
Sequence    

Annotation

kegg
ID rcu:RCOM_1049670
description hypothetical protein
nr
ID XP_002514224.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID B9RKI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108576_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001153_160 0.0329303498 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
3 Hb_004213_010 0.0363807772 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_003101_020 0.0650717293 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
5 Hb_001439_050 0.0691711088 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
6 Hb_062807_010 0.083303386 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
7 Hb_007313_030 0.0839330677 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
8 Hb_003992_130 0.0942113957 - - unnamed protein product [Vitis vinifera]
9 Hb_001958_030 0.1038231501 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_004602_010 0.1122700695 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
11 Hb_002518_040 0.1159799237 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_005892_050 0.1203741764 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
13 Hb_002066_100 0.1212213728 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
14 Hb_027684_010 0.1230781303 - - hypothetical protein RCOM_0504250 [Ricinus communis]
15 Hb_001357_160 0.1232610764 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_150 0.1236150664 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
17 Hb_004218_140 0.1238373638 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
18 Hb_002710_040 0.123869105 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
19 Hb_002243_030 0.1244958597 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
20 Hb_007520_050 0.1251828635 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]

Gene co-expression network

sample Hb_108576_020 Hb_108576_020 Hb_001153_160 Hb_001153_160 Hb_108576_020--Hb_001153_160 Hb_004213_010 Hb_004213_010 Hb_108576_020--Hb_004213_010 Hb_003101_020 Hb_003101_020 Hb_108576_020--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_108576_020--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_108576_020--Hb_062807_010 Hb_007313_030 Hb_007313_030 Hb_108576_020--Hb_007313_030 Hb_001153_160--Hb_004213_010 Hb_003992_130 Hb_003992_130 Hb_001153_160--Hb_003992_130 Hb_000035_150 Hb_000035_150 Hb_001153_160--Hb_000035_150 Hb_001153_160--Hb_007313_030 Hb_001153_160--Hb_003101_020 Hb_004213_010--Hb_003992_130 Hb_004213_010--Hb_000035_150 Hb_004213_010--Hb_007313_030 Hb_004213_010--Hb_003101_020 Hb_003101_020--Hb_001439_050 Hb_003101_020--Hb_062807_010 Hb_002518_040 Hb_002518_040 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_003101_020--Hb_000722_030 Hb_001439_050--Hb_062807_010 Hb_001439_050--Hb_002518_040 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_062807_010--Hb_007313_030 Hb_007313_030--Hb_002518_040 Hb_000086_470 Hb_000086_470 Hb_007313_030--Hb_000086_470 Hb_007313_030--Hb_003101_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.11461 1.67643 0.523553 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.165264 0.551463

CAGE analysis