Hb_108670_010

Information

Type -
Description -
Location Contig108670: 33-266
Sequence    

Annotation

kegg
ID tcc:TCM_040980
description hypothetical protein
nr
ID XP_012065948.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22827 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin ligase big brother-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108670_010 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
2 Hb_005773_010 0.1276254149 - - -
3 Hb_000072_010 0.1318500929 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
4 Hb_104855_010 0.133289546 - - -
5 Hb_055277_010 0.137115405 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
6 Hb_000628_050 0.1390108028 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_005170_020 0.1404774134 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_000061_060 0.1419695947 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
9 Hb_003209_120 0.1464413815 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
10 Hb_011671_360 0.1486421379 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
11 Hb_004241_190 0.1490389222 - - -
12 Hb_014361_140 0.1524197261 - - PREDICTED: peroxidase 51 [Jatropha curcas]
13 Hb_160950_010 0.1572186831 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
14 Hb_002849_010 0.1574250979 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
15 Hb_039440_010 0.157913248 - - conserved hypothetical protein [Ricinus communis]
16 Hb_128460_020 0.1589103728 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
17 Hb_053935_010 0.1621300563 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
18 Hb_158110_010 0.1622363269 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
19 Hb_001115_100 0.1628948617 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
20 Hb_182625_010 0.1649373175 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_108670_010 Hb_108670_010 Hb_005773_010 Hb_005773_010 Hb_108670_010--Hb_005773_010 Hb_000072_010 Hb_000072_010 Hb_108670_010--Hb_000072_010 Hb_104855_010 Hb_104855_010 Hb_108670_010--Hb_104855_010 Hb_055277_010 Hb_055277_010 Hb_108670_010--Hb_055277_010 Hb_000628_050 Hb_000628_050 Hb_108670_010--Hb_000628_050 Hb_005170_020 Hb_005170_020 Hb_108670_010--Hb_005170_020 Hb_005773_010--Hb_000072_010 Hb_005773_010--Hb_104855_010 Hb_005773_010--Hb_000628_050 Hb_160950_010 Hb_160950_010 Hb_005773_010--Hb_160950_010 Hb_039440_010 Hb_039440_010 Hb_005773_010--Hb_039440_010 Hb_000061_060 Hb_000061_060 Hb_005773_010--Hb_000061_060 Hb_000072_010--Hb_104855_010 Hb_011671_360 Hb_011671_360 Hb_000072_010--Hb_011671_360 Hb_000072_010--Hb_039440_010 Hb_005428_010 Hb_005428_010 Hb_000072_010--Hb_005428_010 Hb_000072_010--Hb_160950_010 Hb_104855_010--Hb_011671_360 Hb_104855_010--Hb_000061_060 Hb_182625_010 Hb_182625_010 Hb_104855_010--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_104855_010--Hb_014361_140 Hb_002849_010 Hb_002849_010 Hb_055277_010--Hb_002849_010 Hb_136973_020 Hb_136973_020 Hb_055277_010--Hb_136973_020 Hb_005928_010 Hb_005928_010 Hb_055277_010--Hb_005928_010 Hb_064885_010 Hb_064885_010 Hb_055277_010--Hb_064885_010 Hb_055277_010--Hb_000628_050 Hb_004241_190 Hb_004241_190 Hb_000628_050--Hb_004241_190 Hb_173029_010 Hb_173029_010 Hb_000628_050--Hb_173029_010 Hb_000628_050--Hb_000061_060 Hb_000668_220 Hb_000668_220 Hb_000628_050--Hb_000668_220 Hb_053935_010 Hb_053935_010 Hb_000628_050--Hb_053935_010 Hb_005170_020--Hb_055277_010 Hb_001404_030 Hb_001404_030 Hb_005170_020--Hb_001404_030 Hb_001115_100 Hb_001115_100 Hb_005170_020--Hb_001115_100 Hb_005170_020--Hb_104855_010 Hb_010369_010 Hb_010369_010 Hb_005170_020--Hb_010369_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47616 184.715 158.877 293.659 0.383603 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90291 13.6869 0 0.292706 0

CAGE analysis