Hb_108706_010

Information

Type -
Description -
Location Contig108706: 1100-2214
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012448893.1
description PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108706_010 0.0 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
2 Hb_022132_040 0.204114605 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
3 Hb_001221_270 0.3207010421 - - -
4 Hb_120155_010 0.3345101247 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_017434_060 0.3389911969 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
6 Hb_002025_310 0.3393068874 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_055384_010 0.3413641962 - - -
8 Hb_000252_250 0.3421305112 - - unknown [Lotus japonicus]
9 Hb_001946_270 0.3445336741 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
10 Hb_001008_040 0.3452475855 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
11 Hb_000649_010 0.3452642978 - - PREDICTED: adagio protein 3 [Jatropha curcas]
12 Hb_157846_010 0.3460308937 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_005539_170 0.3468324738 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
14 Hb_002026_010 0.3512909683 transcription factor TF Family: mTERF hypothetical protein CICLE_v10020375mg [Citrus clementina]
15 Hb_000608_060 0.3524147219 - - -
16 Hb_001645_140 0.3538417424 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
17 Hb_010883_200 0.3540813686 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
18 Hb_004883_060 0.3561039525 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
19 Hb_000061_390 0.3566506218 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
20 Hb_116027_010 0.3569361353 - - PREDICTED: separase [Jatropha curcas]

Gene co-expression network

sample Hb_108706_010 Hb_108706_010 Hb_022132_040 Hb_022132_040 Hb_108706_010--Hb_022132_040 Hb_001221_270 Hb_001221_270 Hb_108706_010--Hb_001221_270 Hb_120155_010 Hb_120155_010 Hb_108706_010--Hb_120155_010 Hb_017434_060 Hb_017434_060 Hb_108706_010--Hb_017434_060 Hb_002025_310 Hb_002025_310 Hb_108706_010--Hb_002025_310 Hb_055384_010 Hb_055384_010 Hb_108706_010--Hb_055384_010 Hb_000363_440 Hb_000363_440 Hb_022132_040--Hb_000363_440 Hb_022132_040--Hb_120155_010 Hb_000061_390 Hb_000061_390 Hb_022132_040--Hb_000061_390 Hb_000362_220 Hb_000362_220 Hb_022132_040--Hb_000362_220 Hb_001959_040 Hb_001959_040 Hb_022132_040--Hb_001959_040 Hb_002733_010 Hb_002733_010 Hb_001221_270--Hb_002733_010 Hb_001913_020 Hb_001913_020 Hb_001221_270--Hb_001913_020 Hb_159921_010 Hb_159921_010 Hb_001221_270--Hb_159921_010 Hb_004079_020 Hb_004079_020 Hb_001221_270--Hb_004079_020 Hb_078897_010 Hb_078897_010 Hb_001221_270--Hb_078897_010 Hb_120155_010--Hb_055384_010 Hb_000125_120 Hb_000125_120 Hb_120155_010--Hb_000125_120 Hb_001277_220 Hb_001277_220 Hb_120155_010--Hb_001277_220 Hb_000059_040 Hb_000059_040 Hb_120155_010--Hb_000059_040 Hb_000200_140 Hb_000200_140 Hb_120155_010--Hb_000200_140 Hb_000548_050 Hb_000548_050 Hb_120155_010--Hb_000548_050 Hb_007307_030 Hb_007307_030 Hb_017434_060--Hb_007307_030 Hb_011311_020 Hb_011311_020 Hb_017434_060--Hb_011311_020 Hb_005702_030 Hb_005702_030 Hb_017434_060--Hb_005702_030 Hb_002007_240 Hb_002007_240 Hb_017434_060--Hb_002007_240 Hb_000987_140 Hb_000987_140 Hb_017434_060--Hb_000987_140 Hb_011344_170 Hb_011344_170 Hb_017434_060--Hb_011344_170 Hb_001946_270 Hb_001946_270 Hb_002025_310--Hb_001946_270 Hb_002025_310--Hb_055384_010 Hb_001102_180 Hb_001102_180 Hb_002025_310--Hb_001102_180 Hb_002205_120 Hb_002205_120 Hb_002025_310--Hb_002205_120 Hb_028872_060 Hb_028872_060 Hb_002025_310--Hb_028872_060 Hb_003312_010 Hb_003312_010 Hb_002025_310--Hb_003312_010 Hb_112399_010 Hb_112399_010 Hb_055384_010--Hb_112399_010 Hb_002435_110 Hb_002435_110 Hb_055384_010--Hb_002435_110 Hb_008103_120 Hb_008103_120 Hb_055384_010--Hb_008103_120 Hb_003073_210 Hb_003073_210 Hb_055384_010--Hb_003073_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0643243 0.0750784 0.0481493 0 0 0.0755201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0490866 0 0.0711803 0.0775816 0

CAGE analysis