Hb_108744_010

Information

Type -
Description -
Location Contig108744: 69-764
Sequence    

Annotation

kegg
ID rcu:RCOM_0964340
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517775.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVK6
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108744_010 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_000756_030 0.0384870692 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_152528_010 0.0393950068 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
4 Hb_006142_020 0.0617846938 - - JHL25P11.12 [Jatropha curcas]
5 Hb_000654_060 0.0860726369 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
6 Hb_169136_010 0.0943034964 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005649_070 0.1032411889 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004241_140 0.1066834781 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
9 Hb_001398_110 0.1147451783 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
10 Hb_000160_110 0.1147469014 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
11 Hb_001190_030 0.1149033667 - - hypothetical protein VITISV_017115 [Vitis vinifera]
12 Hb_064971_010 0.1178563177 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_000045_290 0.118019348 - - -
14 Hb_022845_010 0.1183520321 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
15 Hb_144649_010 0.1194219455 - - 60S ribosomal protein L34A [Hevea brasiliensis]
16 Hb_000331_020 0.1229201859 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000256_170 0.1273682269 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
18 Hb_002837_120 0.1276183487 - - PREDICTED: legumin A-like [Jatropha curcas]
19 Hb_002362_010 0.1285509103 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
20 Hb_000164_030 0.1294755396 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]

Gene co-expression network

sample Hb_108744_010 Hb_108744_010 Hb_000756_030 Hb_000756_030 Hb_108744_010--Hb_000756_030 Hb_152528_010 Hb_152528_010 Hb_108744_010--Hb_152528_010 Hb_006142_020 Hb_006142_020 Hb_108744_010--Hb_006142_020 Hb_000654_060 Hb_000654_060 Hb_108744_010--Hb_000654_060 Hb_169136_010 Hb_169136_010 Hb_108744_010--Hb_169136_010 Hb_005649_070 Hb_005649_070 Hb_108744_010--Hb_005649_070 Hb_000756_030--Hb_152528_010 Hb_000756_030--Hb_000654_060 Hb_000756_030--Hb_006142_020 Hb_004241_140 Hb_004241_140 Hb_000756_030--Hb_004241_140 Hb_001398_110 Hb_001398_110 Hb_000756_030--Hb_001398_110 Hb_152528_010--Hb_000654_060 Hb_152528_010--Hb_001398_110 Hb_022845_010 Hb_022845_010 Hb_152528_010--Hb_022845_010 Hb_152528_010--Hb_004241_140 Hb_006142_020--Hb_169136_010 Hb_064971_010 Hb_064971_010 Hb_006142_020--Hb_064971_010 Hb_006142_020--Hb_152528_010 Hb_000157_060 Hb_000157_060 Hb_006142_020--Hb_000157_060 Hb_000654_060--Hb_022845_010 Hb_000654_060--Hb_001398_110 Hb_022465_010 Hb_022465_010 Hb_000654_060--Hb_022465_010 Hb_032011_020 Hb_032011_020 Hb_169136_010--Hb_032011_020 Hb_002837_120 Hb_002837_120 Hb_169136_010--Hb_002837_120 Hb_023558_010 Hb_023558_010 Hb_169136_010--Hb_023558_010 Hb_007975_070 Hb_007975_070 Hb_169136_010--Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_169136_010--Hb_105767_030 Hb_005649_070--Hb_004241_140 Hb_000045_290 Hb_000045_290 Hb_005649_070--Hb_000045_290 Hb_005649_070--Hb_001398_110 Hb_000164_030 Hb_000164_030 Hb_005649_070--Hb_000164_030 Hb_055877_010 Hb_055877_010 Hb_005649_070--Hb_055877_010 Hb_048141_060 Hb_048141_060 Hb_005649_070--Hb_048141_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0842874 1.1927 0.403588 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis