Hb_108854_010

Information

Type -
Description -
Location Contig108854: 1752-2519
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP42480.1
description hypothetical protein JCGZ_00277 [Jatropha curcas]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108854_010 0.0 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
2 Hb_011344_080 0.1986719747 - - -
3 Hb_013394_010 0.2047091396 - - PREDICTED: laccase-14-like [Malus domestica]
4 Hb_000594_170 0.245088963 - - -
5 Hb_005800_040 0.2653568844 - - -
6 Hb_001251_030 0.26770381 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
7 Hb_052761_010 0.2911993456 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
8 Hb_077421_010 0.2958266542 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
9 Hb_002028_080 0.2958271536 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
10 Hb_011269_050 0.2958284153 - - -
11 Hb_000017_010 0.295828458 - - -
12 Hb_003494_170 0.2958300707 - - -
13 Hb_001827_020 0.2958323458 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_004994_060 0.2958530028 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
15 Hb_001768_030 0.2958809178 - - -
16 Hb_000922_230 0.2959182906 - - -
17 Hb_004724_110 0.2960157032 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
18 Hb_000270_570 0.2960512118 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
19 Hb_004642_010 0.2961558319 - - Integrase core domain, putative [Oryza sativa Japonica Group]
20 Hb_138358_010 0.2961723331 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_108854_010 Hb_108854_010 Hb_011344_080 Hb_011344_080 Hb_108854_010--Hb_011344_080 Hb_013394_010 Hb_013394_010 Hb_108854_010--Hb_013394_010 Hb_000594_170 Hb_000594_170 Hb_108854_010--Hb_000594_170 Hb_005800_040 Hb_005800_040 Hb_108854_010--Hb_005800_040 Hb_001251_030 Hb_001251_030 Hb_108854_010--Hb_001251_030 Hb_052761_010 Hb_052761_010 Hb_108854_010--Hb_052761_010 Hb_011344_080--Hb_013394_010 Hb_011344_080--Hb_005800_040 Hb_011344_080--Hb_001251_030 Hb_011344_080--Hb_000594_170 Hb_008071_030 Hb_008071_030 Hb_011344_080--Hb_008071_030 Hb_013394_010--Hb_005800_040 Hb_013394_010--Hb_001251_030 Hb_013394_010--Hb_008071_030 Hb_013394_010--Hb_000594_170 Hb_000594_170--Hb_008071_030 Hb_000908_010 Hb_000908_010 Hb_000594_170--Hb_000908_010 Hb_000594_170--Hb_005800_040 Hb_005800_040--Hb_001251_030 Hb_005800_040--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_005800_040--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_005800_040--Hb_006156_020 Hb_001251_030--Hb_052761_010 Hb_001251_030--Hb_000739_090 Hb_001251_030--Hb_006156_020 Hb_052761_010--Hb_000739_090 Hb_005867_010 Hb_005867_010 Hb_052761_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_052761_010--Hb_001364_020 Hb_000038_160 Hb_000038_160 Hb_052761_010--Hb_000038_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0309426 0 0 0 0.0891394 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0681427 0

CAGE analysis