Hb_108886_010

Information

Type -
Description -
Location Contig108886: 23173-27816
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108886_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001338_060 0.0984114493 - - -
3 Hb_005045_040 0.1982300326 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
4 Hb_000252_030 0.2492095682 - - Heme-binding protein, putative [Ricinus communis]
5 Hb_003025_070 0.2504225352 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
6 Hb_003777_010 0.2715999098 - - -
7 Hb_021419_050 0.2796561376 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
8 Hb_001976_080 0.2998736695 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
9 Hb_007537_010 0.3060850501 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_000042_140 0.3080721351 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
11 Hb_001462_020 0.3276974804 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_071586_010 0.3277033654 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
13 Hb_001545_030 0.3303128478 - - -
14 Hb_001008_040 0.336271114 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
15 Hb_000061_280 0.3394288849 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
16 Hb_001545_190 0.3415634812 - - hypothetical protein VITISV_012031 [Vitis vinifera]
17 Hb_000904_100 0.3442139771 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
18 Hb_096671_010 0.3442504807 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_003952_140 0.3463211917 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
20 Hb_000000_100 0.3617278067 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]

Gene co-expression network

sample Hb_108886_010 Hb_108886_010 Hb_001338_060 Hb_001338_060 Hb_108886_010--Hb_001338_060 Hb_005045_040 Hb_005045_040 Hb_108886_010--Hb_005045_040 Hb_000252_030 Hb_000252_030 Hb_108886_010--Hb_000252_030 Hb_003025_070 Hb_003025_070 Hb_108886_010--Hb_003025_070 Hb_003777_010 Hb_003777_010 Hb_108886_010--Hb_003777_010 Hb_021419_050 Hb_021419_050 Hb_108886_010--Hb_021419_050 Hb_001338_060--Hb_005045_040 Hb_001338_060--Hb_003777_010 Hb_001545_030 Hb_001545_030 Hb_001338_060--Hb_001545_030 Hb_071586_010 Hb_071586_010 Hb_001338_060--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_001338_060--Hb_001462_020 Hb_005045_040--Hb_003777_010 Hb_005045_040--Hb_001545_030 Hb_004296_030 Hb_004296_030 Hb_005045_040--Hb_004296_030 Hb_006478_170 Hb_006478_170 Hb_005045_040--Hb_006478_170 Hb_001021_060 Hb_001021_060 Hb_000252_030--Hb_001021_060 Hb_003952_140 Hb_003952_140 Hb_000252_030--Hb_003952_140 Hb_000252_030--Hb_021419_050 Hb_000252_030--Hb_001338_060 Hb_000042_140 Hb_000042_140 Hb_000252_030--Hb_000042_140 Hb_003025_070--Hb_021419_050 Hb_012399_010 Hb_012399_010 Hb_003025_070--Hb_012399_010 Hb_008835_010 Hb_008835_010 Hb_003025_070--Hb_008835_010 Hb_150851_010 Hb_150851_010 Hb_003025_070--Hb_150851_010 Hb_004680_030 Hb_004680_030 Hb_003025_070--Hb_004680_030 Hb_003777_010--Hb_071586_010 Hb_003777_010--Hb_001462_020 Hb_003777_010--Hb_006478_170 Hb_096671_010 Hb_096671_010 Hb_003777_010--Hb_096671_010 Hb_021419_050--Hb_008835_010 Hb_021419_050--Hb_150851_010 Hb_021419_050--Hb_012399_010 Hb_000061_280 Hb_000061_280 Hb_021419_050--Hb_000061_280 Hb_021419_050--Hb_004680_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0110815 0 0 0 0.00392212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0153977 0.00317235 0

CAGE analysis