Hb_109000_020

Information

Type -
Description -
Location Contig109000: 3163-6355
Sequence    

Annotation

kegg
ID rcu:RCOM_1593870
description hypothetical protein
nr
ID XP_012071759.1
description PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R7R5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02740: 3198-3566 , PASA_asmbl_02741: 3598-4182 , PASA_asmbl_02742: 3831-4171 , PASA_asmbl_02743: 4812-6257 , PASA_asmbl_02744: 4812-5649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109000_020 0.0 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
2 Hb_003878_150 0.0511691401 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
3 Hb_009328_020 0.0632673228 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001232_190 0.0671845298 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
5 Hb_008616_050 0.0715080221 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
6 Hb_001662_100 0.0768774995 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
7 Hb_041290_020 0.0789712734 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
8 Hb_000256_150 0.0801133991 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_004109_080 0.0808712047 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
10 Hb_002897_090 0.0810011304 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000181_130 0.0818931811 - - ATP binding protein, putative [Ricinus communis]
12 Hb_005800_030 0.0824104719 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
13 Hb_005725_130 0.0829733222 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
14 Hb_004531_140 0.0835164601 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
15 Hb_009569_040 0.0838249988 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
16 Hb_000258_070 0.0866022509 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
17 Hb_001247_310 0.08710955 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
18 Hb_000479_250 0.0877621607 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
19 Hb_002414_050 0.0886229558 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
20 Hb_000300_270 0.0889296502 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_109000_020 Hb_109000_020 Hb_003878_150 Hb_003878_150 Hb_109000_020--Hb_003878_150 Hb_009328_020 Hb_009328_020 Hb_109000_020--Hb_009328_020 Hb_001232_190 Hb_001232_190 Hb_109000_020--Hb_001232_190 Hb_008616_050 Hb_008616_050 Hb_109000_020--Hb_008616_050 Hb_001662_100 Hb_001662_100 Hb_109000_020--Hb_001662_100 Hb_041290_020 Hb_041290_020 Hb_109000_020--Hb_041290_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_001195_400 Hb_001195_400 Hb_003878_150--Hb_001195_400 Hb_000181_130 Hb_000181_130 Hb_009328_020--Hb_000181_130 Hb_000479_250 Hb_000479_250 Hb_009328_020--Hb_000479_250 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_001898_210 Hb_001898_210 Hb_009328_020--Hb_001898_210 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_001232_190--Hb_008616_050 Hb_000579_120 Hb_000579_120 Hb_001232_190--Hb_000579_120 Hb_002641_060 Hb_002641_060 Hb_001232_190--Hb_002641_060 Hb_000058_130 Hb_000058_130 Hb_001232_190--Hb_000058_130 Hb_000207_150 Hb_000207_150 Hb_001232_190--Hb_000207_150 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_004846_220 Hb_004846_220 Hb_041290_020--Hb_004846_220 Hb_006483_110 Hb_006483_110 Hb_041290_020--Hb_006483_110 Hb_004109_080 Hb_004109_080 Hb_041290_020--Hb_004109_080 Hb_028960_020 Hb_028960_020 Hb_041290_020--Hb_028960_020 Hb_000138_100 Hb_000138_100 Hb_041290_020--Hb_000138_100 Hb_000406_200 Hb_000406_200 Hb_041290_020--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60787 2.34233 3.89124 6.33331 3.45824 4.74186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16091 4.76995 2.70711 3.98154 5.83742

CAGE analysis