Hb_109092_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig109092: 330-2299
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0005739
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109092_010 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_000109_160 0.0821477174 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
3 Hb_000245_130 0.0910101826 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
4 Hb_000127_130 0.0913220109 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
5 Hb_020956_020 0.091447445 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
6 Hb_096563_010 0.0933080862 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
7 Hb_001252_010 0.0956453553 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
8 Hb_001097_050 0.0956914538 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000062_550 0.0978174712 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
10 Hb_002659_070 0.0994478844 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
11 Hb_002027_260 0.0996062872 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
12 Hb_086639_070 0.1007715152 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_001301_160 0.1015924041 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
14 Hb_001358_030 0.1031345036 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
15 Hb_003010_030 0.1042517303 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
16 Hb_001259_090 0.1044239723 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
17 Hb_002375_020 0.1045742689 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
18 Hb_000230_200 0.1048117808 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
19 Hb_000780_060 0.1050049732 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
20 Hb_005928_110 0.105699468 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]

Gene co-expression network

sample Hb_109092_010 Hb_109092_010 Hb_000109_160 Hb_000109_160 Hb_109092_010--Hb_000109_160 Hb_000245_130 Hb_000245_130 Hb_109092_010--Hb_000245_130 Hb_000127_130 Hb_000127_130 Hb_109092_010--Hb_000127_130 Hb_020956_020 Hb_020956_020 Hb_109092_010--Hb_020956_020 Hb_096563_010 Hb_096563_010 Hb_109092_010--Hb_096563_010 Hb_001252_010 Hb_001252_010 Hb_109092_010--Hb_001252_010 Hb_005928_110 Hb_005928_110 Hb_000109_160--Hb_005928_110 Hb_007590_050 Hb_007590_050 Hb_000109_160--Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_000109_160--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_000109_160--Hb_002685_170 Hb_000109_160--Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_000109_160--Hb_000510_130 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_004128_190 Hb_004128_190 Hb_000245_130--Hb_004128_190 Hb_003847_080 Hb_003847_080 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_002078_150 Hb_002078_150 Hb_000245_130--Hb_002078_150 Hb_000031_060 Hb_000031_060 Hb_000127_130--Hb_000031_060 Hb_002256_030 Hb_002256_030 Hb_000127_130--Hb_002256_030 Hb_002685_010 Hb_002685_010 Hb_000127_130--Hb_002685_010 Hb_000139_410 Hb_000139_410 Hb_000127_130--Hb_000139_410 Hb_001488_070 Hb_001488_070 Hb_000127_130--Hb_001488_070 Hb_020956_020--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_020956_020--Hb_010504_020 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_005305_080 Hb_005305_080 Hb_020956_020--Hb_005305_080 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_003609_030 Hb_003609_030 Hb_001252_010--Hb_003609_030 Hb_001595_030 Hb_001595_030 Hb_001252_010--Hb_001595_030 Hb_008803_090 Hb_008803_090 Hb_001252_010--Hb_008803_090 Hb_000125_170 Hb_000125_170 Hb_001252_010--Hb_000125_170 Hb_002027_260 Hb_002027_260 Hb_001252_010--Hb_002027_260 Hb_005532_050 Hb_005532_050 Hb_001252_010--Hb_005532_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1914 9.90586 3.29408 10.0279 9.99194 15.6297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2601 15.9132 8.8462 5.11814 4.20473

CAGE analysis