Hb_109187_010

Information

Type -
Description -
Location Contig109187: 1451-1756
Sequence    

Annotation

kegg
ID csv:101217131
description serine/threonine-protein kinase PBS1-like
nr
ID XP_004144242.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID A0A0A0KIG2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G355990 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109187_010 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
2 Hb_000589_080 0.0432035401 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
3 Hb_000579_160 0.0630081206 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
4 Hb_003050_240 0.1288434213 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003906_040 0.1419653633 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
6 Hb_178343_010 0.1421339224 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
7 Hb_003092_010 0.1501372473 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
8 Hb_000002_190 0.1633844681 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
9 Hb_000003_520 0.1633844681 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
10 Hb_000005_170 0.1633844681 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
11 Hb_000009_230 0.1633844681 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
12 Hb_000011_110 0.1633844681 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
13 Hb_000012_390 0.1633844681 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000018_070 0.1633844681 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
15 Hb_000020_130 0.1633844681 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
16 Hb_000024_090 0.1633844681 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000025_560 0.1633844681 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_000028_310 0.1633844681 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
19 Hb_000037_140 0.1633844681 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]
20 Hb_000046_420 0.1633844681 - - hypothetical protein JCGZ_02014 [Jatropha curcas]

Gene co-expression network

sample Hb_109187_010 Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_109187_010--Hb_000589_080 Hb_000579_160 Hb_000579_160 Hb_109187_010--Hb_000579_160 Hb_003050_240 Hb_003050_240 Hb_109187_010--Hb_003050_240 Hb_003906_040 Hb_003906_040 Hb_109187_010--Hb_003906_040 Hb_178343_010 Hb_178343_010 Hb_109187_010--Hb_178343_010 Hb_003092_010 Hb_003092_010 Hb_109187_010--Hb_003092_010 Hb_000589_080--Hb_000579_160 Hb_000589_080--Hb_003092_010 Hb_000002_190 Hb_000002_190 Hb_000589_080--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000589_080--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000589_080--Hb_000005_170 Hb_000579_160--Hb_003050_240 Hb_000579_160--Hb_003906_040 Hb_036693_020 Hb_036693_020 Hb_000579_160--Hb_036693_020 Hb_000579_160--Hb_178343_010 Hb_003050_240--Hb_036693_020 Hb_003050_240--Hb_000589_080 Hb_063907_010 Hb_063907_010 Hb_003050_240--Hb_063907_010 Hb_000164_210 Hb_000164_210 Hb_003050_240--Hb_000164_210 Hb_003906_040--Hb_178343_010 Hb_012753_140 Hb_012753_140 Hb_003906_040--Hb_012753_140 Hb_003906_040--Hb_000589_080 Hb_005694_140 Hb_005694_140 Hb_003906_040--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_003906_040--Hb_116486_010 Hb_178343_010--Hb_012753_140 Hb_120496_010 Hb_120496_010 Hb_178343_010--Hb_120496_010 Hb_017524_020 Hb_017524_020 Hb_178343_010--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_178343_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_178343_010--Hb_118941_010 Hb_001322_200 Hb_001322_200 Hb_003092_010--Hb_001322_200 Hb_000103_210 Hb_000103_210 Hb_003092_010--Hb_000103_210 Hb_000203_130 Hb_000203_130 Hb_003092_010--Hb_000203_130 Hb_060416_010 Hb_060416_010 Hb_003092_010--Hb_060416_010 Hb_001817_050 Hb_001817_050 Hb_003092_010--Hb_001817_050 Hb_003092_010--Hb_000002_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149698 0 0 2.70861 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis