Hb_109484_010

Information

Type -
Description -
Location Contig109484: 1-1681
Sequence    

Annotation

kegg
ID rcu:RCOM_0574490
description hypothetical protein
nr
ID XP_012066186.1
description PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
swissprot
ID Q54J07
description INO80 complex subunit D OS=Dictyostelium discoideum GN=DDB_G0288447 PE=3 SV=1
trembl
ID A0A067L341
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23764 PE=4 SV=1
Gene Ontology
ID GO:0000123
description ino80 complex subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109484_010 0.0 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
2 Hb_001221_110 0.0846991957 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
3 Hb_007382_120 0.0856078189 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
4 Hb_004781_010 0.088775967 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
5 Hb_000028_370 0.0914839791 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
6 Hb_002007_150 0.0935983183 - - -
7 Hb_000215_320 0.096583289 - - phosphofructokinase [Hevea brasiliensis]
8 Hb_000008_420 0.0972489307 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
9 Hb_009627_030 0.0972865657 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
10 Hb_000649_110 0.0991516628 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
11 Hb_013738_020 0.099741304 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_017387_010 0.102728326 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
13 Hb_024958_010 0.103950786 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
14 Hb_001221_430 0.1056475542 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
15 Hb_000522_150 0.1063417712 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
16 Hb_000676_260 0.1064224748 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
17 Hb_001359_050 0.1071825121 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000173_280 0.1076272898 - - Speckle-type POZ protein, putative [Ricinus communis]
19 Hb_000120_820 0.1082859312 - - dihydrodipicolinate synthase, putative [Ricinus communis]
20 Hb_000062_070 0.1089401299 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_109484_010 Hb_109484_010 Hb_001221_110 Hb_001221_110 Hb_109484_010--Hb_001221_110 Hb_007382_120 Hb_007382_120 Hb_109484_010--Hb_007382_120 Hb_004781_010 Hb_004781_010 Hb_109484_010--Hb_004781_010 Hb_000028_370 Hb_000028_370 Hb_109484_010--Hb_000028_370 Hb_002007_150 Hb_002007_150 Hb_109484_010--Hb_002007_150 Hb_000215_320 Hb_000215_320 Hb_109484_010--Hb_000215_320 Hb_001359_050 Hb_001359_050 Hb_001221_110--Hb_001359_050 Hb_000649_110 Hb_000649_110 Hb_001221_110--Hb_000649_110 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_000173_280 Hb_000173_280 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_024958_010 Hb_024958_010 Hb_001221_110--Hb_024958_010 Hb_000120_820 Hb_000120_820 Hb_007382_120--Hb_000120_820 Hb_007382_120--Hb_002007_150 Hb_000008_420 Hb_000008_420 Hb_007382_120--Hb_000008_420 Hb_000490_060 Hb_000490_060 Hb_007382_120--Hb_000490_060 Hb_002915_060 Hb_002915_060 Hb_007382_120--Hb_002915_060 Hb_010775_040 Hb_010775_040 Hb_004781_010--Hb_010775_040 Hb_029243_030 Hb_029243_030 Hb_004781_010--Hb_029243_030 Hb_000078_120 Hb_000078_120 Hb_004781_010--Hb_000078_120 Hb_000917_230 Hb_000917_230 Hb_004781_010--Hb_000917_230 Hb_006452_100 Hb_006452_100 Hb_004781_010--Hb_006452_100 Hb_023001_040 Hb_023001_040 Hb_004781_010--Hb_023001_040 Hb_002205_110 Hb_002205_110 Hb_000028_370--Hb_002205_110 Hb_001205_240 Hb_001205_240 Hb_000028_370--Hb_001205_240 Hb_008725_230 Hb_008725_230 Hb_000028_370--Hb_008725_230 Hb_002232_410 Hb_002232_410 Hb_000028_370--Hb_002232_410 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_003849_110 Hb_003849_110 Hb_002007_150--Hb_003849_110 Hb_000521_330 Hb_000521_330 Hb_002007_150--Hb_000521_330 Hb_003906_200 Hb_003906_200 Hb_002007_150--Hb_003906_200 Hb_003464_090 Hb_003464_090 Hb_002007_150--Hb_003464_090 Hb_000347_250 Hb_000347_250 Hb_002007_150--Hb_000347_250 Hb_000868_090 Hb_000868_090 Hb_002007_150--Hb_000868_090 Hb_000890_150 Hb_000890_150 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42482 16.4235 8.59817 16.0703 6.53436 8.01529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8476 16.9159 6.40464 14.4005 6.6243

CAGE analysis