Hb_109578_010

Information

Type -
Description -
Location Contig109578: 5258-5973
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_002524890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109578_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005199_010 0.1441270272 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000275_010 0.1707513093 - - -
4 Hb_000179_150 0.201182715 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
5 Hb_004048_010 0.2183547426 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
6 Hb_084889_010 0.2219457649 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
7 Hb_001017_080 0.2237498908 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
8 Hb_000975_270 0.2268200838 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
9 Hb_156503_040 0.2368355637 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_000282_140 0.2391591452 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
11 Hb_003992_110 0.2393506087 - - hypothetical protein VITISV_016971 [Vitis vinifera]
12 Hb_133311_010 0.2404164749 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
13 Hb_032974_010 0.2512793379 - - -
14 Hb_001405_130 0.2515686574 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
15 Hb_013492_010 0.2528278269 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
16 Hb_002741_030 0.2529025776 - - -
17 Hb_000500_210 0.2549815735 - - -
18 Hb_005463_060 0.2551097579 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
19 Hb_001143_010 0.2612570975 - - -
20 Hb_186158_010 0.2635829815 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_109578_010 Hb_109578_010 Hb_005199_010 Hb_005199_010 Hb_109578_010--Hb_005199_010 Hb_000275_010 Hb_000275_010 Hb_109578_010--Hb_000275_010 Hb_000179_150 Hb_000179_150 Hb_109578_010--Hb_000179_150 Hb_004048_010 Hb_004048_010 Hb_109578_010--Hb_004048_010 Hb_084889_010 Hb_084889_010 Hb_109578_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_109578_010--Hb_001017_080 Hb_005199_010--Hb_000275_010 Hb_001405_130 Hb_001405_130 Hb_005199_010--Hb_001405_130 Hb_005199_010--Hb_004048_010 Hb_000345_430 Hb_000345_430 Hb_005199_010--Hb_000345_430 Hb_007765_120 Hb_007765_120 Hb_005199_010--Hb_007765_120 Hb_005222_020 Hb_005222_020 Hb_000275_010--Hb_005222_020 Hb_002741_030 Hb_002741_030 Hb_000275_010--Hb_002741_030 Hb_145890_010 Hb_145890_010 Hb_000275_010--Hb_145890_010 Hb_001186_050 Hb_001186_050 Hb_000275_010--Hb_001186_050 Hb_000179_150--Hb_084889_010 Hb_133311_010 Hb_133311_010 Hb_000179_150--Hb_133311_010 Hb_009139_010 Hb_009139_010 Hb_000179_150--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000179_150--Hb_000713_020 Hb_001495_060 Hb_001495_060 Hb_000179_150--Hb_001495_060 Hb_004048_010--Hb_001405_130 Hb_029982_010 Hb_029982_010 Hb_004048_010--Hb_029982_010 Hb_000134_020 Hb_000134_020 Hb_004048_010--Hb_000134_020 Hb_003638_080 Hb_003638_080 Hb_004048_010--Hb_003638_080 Hb_029888_020 Hb_029888_020 Hb_004048_010--Hb_029888_020 Hb_032974_010 Hb_032974_010 Hb_084889_010--Hb_032974_010 Hb_004102_030 Hb_004102_030 Hb_084889_010--Hb_004102_030 Hb_000975_270 Hb_000975_270 Hb_084889_010--Hb_000975_270 Hb_084889_010--Hb_001017_080 Hb_000025_440 Hb_000025_440 Hb_001017_080--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_001017_080--Hb_156503_040 Hb_000500_210 Hb_000500_210 Hb_001017_080--Hb_000500_210 Hb_004931_010 Hb_004931_010 Hb_001017_080--Hb_004931_010 Hb_001017_080--Hb_000975_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96432 1.61494 1.44153 2.7345 0.139439 5.0881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9778 21.0321 0 0.223328 0

CAGE analysis