Hb_110218_010

Information

Type -
Description -
Location Contig110218: 139-540
Sequence    

Annotation

kegg
ID egr:104428128
description uncharacterized LOC104428128
nr
ID XP_010039414.1
description PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110218_010 0.0 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
2 Hb_009012_020 0.0907431888 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
3 Hb_000684_020 0.0927353722 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_004463_040 0.0939798133 - - -
5 Hb_003900_050 0.1174928537 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
6 Hb_000976_020 0.1180951272 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_004200_040 0.1252917616 - - laccase, putative [Ricinus communis]
8 Hb_000411_060 0.12737957 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_007894_260 0.1293240073 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_001013_040 0.136137034 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
11 Hb_007875_070 0.1378421423 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
12 Hb_000522_040 0.1378776031 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
13 Hb_000381_030 0.142061541 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
14 Hb_000286_190 0.142278773 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
15 Hb_008225_080 0.1438129243 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
16 Hb_018591_050 0.1442858053 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
17 Hb_002048_010 0.1452719767 - - unknown [Lotus japonicus]
18 Hb_000487_170 0.1455373738 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_000205_210 0.1456999623 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
20 Hb_032050_050 0.1458719826 - - PREDICTED: peroxidase 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_110218_010 Hb_110218_010 Hb_009012_020 Hb_009012_020 Hb_110218_010--Hb_009012_020 Hb_000684_020 Hb_000684_020 Hb_110218_010--Hb_000684_020 Hb_004463_040 Hb_004463_040 Hb_110218_010--Hb_004463_040 Hb_003900_050 Hb_003900_050 Hb_110218_010--Hb_003900_050 Hb_000976_020 Hb_000976_020 Hb_110218_010--Hb_000976_020 Hb_004200_040 Hb_004200_040 Hb_110218_010--Hb_004200_040 Hb_001902_180 Hb_001902_180 Hb_009012_020--Hb_001902_180 Hb_000046_060 Hb_000046_060 Hb_009012_020--Hb_000046_060 Hb_009012_020--Hb_004463_040 Hb_009012_020--Hb_000684_020 Hb_000411_060 Hb_000411_060 Hb_009012_020--Hb_000411_060 Hb_000684_020--Hb_004200_040 Hb_000684_020--Hb_004463_040 Hb_002553_120 Hb_002553_120 Hb_000684_020--Hb_002553_120 Hb_000684_020--Hb_003900_050 Hb_004463_040--Hb_003900_050 Hb_004463_040--Hb_004200_040 Hb_004463_040--Hb_000976_020 Hb_020332_040 Hb_020332_040 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010 Hb_003900_050--Hb_004200_040 Hb_000205_210 Hb_000205_210 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_000976_020--Hb_020332_040 Hb_004200_040--Hb_000140_260 Hb_004200_040--Hb_000205_210 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.083295 8.21585 1.28309 1.46413 0.0785608 0.37928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 30.7942 2.72949

CAGE analysis