Hb_110266_010

Information

Type -
Description -
Location Contig110266: 2-562
Sequence    

Annotation

kegg
ID rcu:RCOM_1052550
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012076705.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
swissprot
ID Q8S9D1
description Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
trembl
ID A0A067KFC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07254 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110266_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
2 Hb_002007_120 0.0613355731 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
3 Hb_092516_010 0.0765686342 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
4 Hb_000313_250 0.0778792913 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
5 Hb_048141_050 0.0837698206 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
6 Hb_000294_020 0.085055299 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
7 Hb_078954_030 0.0893650857 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000962_090 0.0903280135 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
9 Hb_179129_010 0.0909269595 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
10 Hb_000638_220 0.0911313716 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
11 Hb_000358_160 0.0919186484 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
12 Hb_000928_100 0.0945462796 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_005000_110 0.0945525319 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
14 Hb_000345_400 0.0948108619 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000123_360 0.094864423 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001424_010 0.0951905186 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_000340_280 0.0962806712 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000359_050 0.0989847961 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
19 Hb_000530_040 0.0990409573 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
20 Hb_004346_050 0.1001082143 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]

Gene co-expression network

sample Hb_110266_010 Hb_110266_010 Hb_002007_120 Hb_002007_120 Hb_110266_010--Hb_002007_120 Hb_092516_010 Hb_092516_010 Hb_110266_010--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_110266_010--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_000294_020 Hb_000294_020 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_002007_120--Hb_000313_250 Hb_002007_120--Hb_048141_050 Hb_002007_120--Hb_092516_010 Hb_000530_040 Hb_000530_040 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090 Hb_000358_160 Hb_000358_160 Hb_092516_010--Hb_000358_160 Hb_092516_010--Hb_000294_020 Hb_021443_060 Hb_021443_060 Hb_092516_010--Hb_021443_060 Hb_092516_010--Hb_000313_250 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_000313_250--Hb_021443_060 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_004346_050 Hb_004346_050 Hb_048141_050--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_048141_050--Hb_016371_010 Hb_179129_010 Hb_179129_010 Hb_048141_050--Hb_179129_010 Hb_004411_010 Hb_004411_010 Hb_048141_050--Hb_004411_010 Hb_048141_050--Hb_078954_030 Hb_000087_040 Hb_000087_040 Hb_048141_050--Hb_000087_040 Hb_003777_090 Hb_003777_090 Hb_000294_020--Hb_003777_090 Hb_000483_470 Hb_000483_470 Hb_000294_020--Hb_000483_470 Hb_000236_130 Hb_000236_130 Hb_000294_020--Hb_000236_130 Hb_000928_100 Hb_000928_100 Hb_000294_020--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000294_020--Hb_022167_010 Hb_001424_010 Hb_001424_010 Hb_078954_030--Hb_001424_010 Hb_078954_030--Hb_179129_010 Hb_078954_030--Hb_004346_050 Hb_000025_700 Hb_000025_700 Hb_078954_030--Hb_000025_700 Hb_078954_030--Hb_016371_010 Hb_078954_030--Hb_000530_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.205127 9.4208 92.4555 22.8246 0.145044 0.119557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56495 1.05406 0.152015 1.30243 63.8602

CAGE analysis