Hb_110291_010

Information

Type -
Description -
Location Contig110291: 18-1392
Sequence    

Annotation

kegg
ID rcu:RCOM_1443460
description hypothetical protein
nr
ID XP_002512780.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LDX1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1
trembl
ID B9RGS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443460 PE=4 SV=1
Gene Ontology
ID GO:0031047
description protein suppressor of gene silencing 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03198: 236-779 , PASA_asmbl_03199: 994-1123
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110291_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003878_070 0.0561739173 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
3 Hb_001638_170 0.0668437552 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
4 Hb_004143_060 0.072020669 - - DNA binding protein, putative [Ricinus communis]
5 Hb_009218_010 0.0724049246 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
6 Hb_001014_160 0.0726768029 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
7 Hb_165928_020 0.0739421188 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
8 Hb_004412_010 0.0743259297 - - -
9 Hb_007575_050 0.0753968237 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
10 Hb_007390_010 0.0755581924 - - catalytic, putative [Ricinus communis]
11 Hb_154745_010 0.076340641 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_002154_100 0.0763749823 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
13 Hb_000092_170 0.0787580336 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
14 Hb_002045_240 0.079383238 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
15 Hb_000334_280 0.0797203171 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
16 Hb_000120_730 0.0800796154 - - hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
17 Hb_172632_080 0.080247842 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
18 Hb_003525_010 0.0809687943 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
19 Hb_000120_920 0.0810481206 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_044728_010 0.081404163 - - -

Gene co-expression network

sample Hb_110291_010 Hb_110291_010 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_004143_060 Hb_004143_060 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020 Hb_007575_050 Hb_007575_050 Hb_003878_070--Hb_007575_050 Hb_000334_280 Hb_000334_280 Hb_003878_070--Hb_000334_280 Hb_007054_060 Hb_007054_060 Hb_003878_070--Hb_007054_060 Hb_003525_010 Hb_003525_010 Hb_003878_070--Hb_003525_010 Hb_003125_120 Hb_003125_120 Hb_003878_070--Hb_003125_120 Hb_004032_150 Hb_004032_150 Hb_001638_170--Hb_004032_150 Hb_005291_030 Hb_005291_030 Hb_001638_170--Hb_005291_030 Hb_001489_150 Hb_001489_150 Hb_001638_170--Hb_001489_150 Hb_000085_160 Hb_000085_160 Hb_001638_170--Hb_000085_160 Hb_002835_080 Hb_002835_080 Hb_001638_170--Hb_002835_080 Hb_000331_260 Hb_000331_260 Hb_004143_060--Hb_000331_260 Hb_016172_020 Hb_016172_020 Hb_004143_060--Hb_016172_020 Hb_007390_010 Hb_007390_010 Hb_004143_060--Hb_007390_010 Hb_011037_030 Hb_011037_030 Hb_004143_060--Hb_011037_030 Hb_000696_330 Hb_000696_330 Hb_004143_060--Hb_000696_330 Hb_000215_110 Hb_000215_110 Hb_004143_060--Hb_000215_110 Hb_172632_080 Hb_172632_080 Hb_009218_010--Hb_172632_080 Hb_001341_170 Hb_001341_170 Hb_009218_010--Hb_001341_170 Hb_009218_010--Hb_004143_060 Hb_044728_010 Hb_044728_010 Hb_009218_010--Hb_044728_010 Hb_001199_100 Hb_001199_100 Hb_009218_010--Hb_001199_100 Hb_002154_100 Hb_002154_100 Hb_001014_160--Hb_002154_100 Hb_004963_030 Hb_004963_030 Hb_001014_160--Hb_004963_030 Hb_001014_160--Hb_007390_010 Hb_001442_040 Hb_001442_040 Hb_001014_160--Hb_001442_040 Hb_001014_160--Hb_000331_260 Hb_000120_920 Hb_000120_920 Hb_165928_020--Hb_000120_920 Hb_004841_010 Hb_004841_010 Hb_165928_020--Hb_004841_010 Hb_023386_020 Hb_023386_020 Hb_165928_020--Hb_023386_020 Hb_165928_020--Hb_016172_020 Hb_004412_010 Hb_004412_010 Hb_165928_020--Hb_004412_010 Hb_000062_430 Hb_000062_430 Hb_165928_020--Hb_000062_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.94679 0.641012 0.430279 0.599394 0.683062 1.3461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.77553 1.07647 0.663968 0.748899 0.885973

CAGE analysis