Hb_110364_010

Information

Type -
Description -
Location Contig110364: 4622-6566
Sequence    

Annotation

kegg
ID rcu:RCOM_1158460
description gamma-tubulin complex component, putative
nr
ID XP_002529877.1
description gamma-tubulin complex component, putative [Ricinus communis]
swissprot
ID Q9C5H9
description Gamma-tubulin complex component 2 OS=Arabidopsis thaliana GN=GCP2 PE=1 SV=1
trembl
ID B9SV58
description Gamma-tubulin complex component, putative OS=Ricinus communis GN=RCOM_1158460 PE=4 SV=1
Gene Ontology
ID GO:0000922
description gamma-tubulin complex component 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110364_010 0.0 - - gamma-tubulin complex component, putative [Ricinus communis]
2 Hb_001307_140 0.0608484189 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
3 Hb_063047_010 0.0785949919 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
4 Hb_001040_160 0.0835719408 - - glutaredoxin, grx, putative [Ricinus communis]
5 Hb_002341_030 0.0885147566 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
6 Hb_005635_010 0.0899801105 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
7 Hb_001871_040 0.095413837 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
8 Hb_000568_040 0.0977282056 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
9 Hb_012016_020 0.1010157797 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
10 Hb_000977_310 0.1030220598 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
11 Hb_000173_400 0.1045182484 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
12 Hb_001431_070 0.1078547043 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
13 Hb_005399_010 0.1093083118 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
14 Hb_001019_170 0.1105307712 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
15 Hb_000046_450 0.110682925 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_002928_060 0.1126025083 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
17 Hb_000136_150 0.1128751738 - - hypothetical protein VITISV_038366 [Vitis vinifera]
18 Hb_003299_090 0.1129361328 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
19 Hb_000017_340 0.1137950506 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
20 Hb_008714_020 0.1146861302 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_110364_010 Hb_110364_010 Hb_001307_140 Hb_001307_140 Hb_110364_010--Hb_001307_140 Hb_063047_010 Hb_063047_010 Hb_110364_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_110364_010--Hb_001040_160 Hb_002341_030 Hb_002341_030 Hb_110364_010--Hb_002341_030 Hb_005635_010 Hb_005635_010 Hb_110364_010--Hb_005635_010 Hb_001871_040 Hb_001871_040 Hb_110364_010--Hb_001871_040 Hb_001307_140--Hb_063047_010 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_000453_270 Hb_000453_270 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_063047_010--Hb_001040_160 Hb_063047_010--Hb_001871_040 Hb_000316_030 Hb_000316_030 Hb_063047_010--Hb_000316_030 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001040_160--Hb_001609_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_012016_020 Hb_012016_020 Hb_002341_030--Hb_012016_020 Hb_002725_070 Hb_002725_070 Hb_002341_030--Hb_002725_070 Hb_002341_030--Hb_005635_010 Hb_002928_060 Hb_002928_060 Hb_002341_030--Hb_002928_060 Hb_001504_160 Hb_001504_160 Hb_002341_030--Hb_001504_160 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_005295_040 Hb_005295_040 Hb_005635_010--Hb_005295_040 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_000078_100 Hb_000078_100 Hb_005635_010--Hb_000078_100 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_001871_040--Hb_002928_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2051 32.7774 9.48914 12.3405 50.7815 103.306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5202 10.1942 37.7603 22.9327 9.23824

CAGE analysis