Hb_110482_010

Information

Type -
Description -
Location Contig110482: 158-2771
Sequence    

Annotation

kegg
ID rcu:RCOM_1183360
description pinn, putative
nr
ID KDP43620.1
description hypothetical protein JCGZ_16907 [Jatropha curcas]
swissprot
ID Q9H307
description Pinin OS=Homo sapiens GN=PNN PE=1 SV=4
trembl
ID A0A067LGC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16907 PE=4 SV=1
Gene Ontology
ID GO:0003700
description pinin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110482_010 0.0 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
2 Hb_000098_130 0.0834479135 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
3 Hb_000120_620 0.0879413999 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
4 Hb_000300_360 0.0890954998 - - PREDICTED: exosome component 10 [Jatropha curcas]
5 Hb_002659_060 0.0902592962 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
6 Hb_000120_610 0.0905414871 - - mitotic control protein dis3, putative [Ricinus communis]
7 Hb_004920_130 0.0938814215 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_033883_060 0.0957727043 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
9 Hb_004970_160 0.0962914948 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
10 Hb_001633_040 0.0970531811 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
11 Hb_031042_070 0.0974184192 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003299_070 0.0976798185 - - AMP deaminase [Theobroma cacao]
13 Hb_004899_070 0.0994021345 - - PREDICTED: RRP12-like protein [Jatropha curcas]
14 Hb_000261_290 0.0995739994 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
15 Hb_000186_260 0.1003765248 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
16 Hb_000331_160 0.101129452 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
17 Hb_000504_160 0.1011542237 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
18 Hb_001492_010 0.1016063367 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
19 Hb_000264_100 0.1025090764 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000594_020 0.1029740572 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_110482_010 Hb_110482_010 Hb_000098_130 Hb_000098_130 Hb_110482_010--Hb_000098_130 Hb_000120_620 Hb_000120_620 Hb_110482_010--Hb_000120_620 Hb_000300_360 Hb_000300_360 Hb_110482_010--Hb_000300_360 Hb_002659_060 Hb_002659_060 Hb_110482_010--Hb_002659_060 Hb_000120_610 Hb_000120_610 Hb_110482_010--Hb_000120_610 Hb_004920_130 Hb_004920_130 Hb_110482_010--Hb_004920_130 Hb_000261_290 Hb_000261_290 Hb_000098_130--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_000098_130--Hb_004899_070 Hb_000098_130--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_000098_130--Hb_003097_180 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000098_130--Hb_000300_360 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_003097_180 Hb_000120_620--Hb_000261_290 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_002659_060--Hb_000120_610 Hb_000594_020 Hb_000594_020 Hb_002659_060--Hb_000594_020 Hb_000504_160 Hb_000504_160 Hb_002659_060--Hb_000504_160 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000120_610--Hb_000594_020 Hb_000120_610--Hb_140049_020 Hb_000120_610--Hb_004899_070 Hb_000120_610--Hb_004970_160 Hb_004920_130--Hb_033883_060 Hb_001157_180 Hb_001157_180 Hb_004920_130--Hb_001157_180 Hb_031042_070 Hb_031042_070 Hb_004920_130--Hb_031042_070 Hb_000813_100 Hb_000813_100 Hb_004920_130--Hb_000813_100 Hb_000821_010 Hb_000821_010 Hb_004920_130--Hb_000821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.9986 56.2144 24.938 20.1329 57.0963 62.0016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5185 10.899 9.37447 39.5555 16.8522

CAGE analysis