Hb_110486_010

Information

Type -
Description -
Location Contig110486: 1665-4996
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110486_010 0.0 - - -
2 Hb_046707_010 0.1342048109 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
3 Hb_033883_050 0.1870472191 - - -
4 Hb_037271_010 0.2062961214 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_001014_200 0.2129364335 - - -
6 Hb_000875_100 0.2306624743 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
7 Hb_121031_010 0.2610066961 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
8 Hb_034050_010 0.2672326344 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
9 Hb_011537_120 0.2854893836 - - -
10 Hb_004162_300 0.3112949218 - - monovalent cation:proton antiporter, putative [Ricinus communis]
11 Hb_027014_010 0.3169173059 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_179447_010 0.321740414 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
13 Hb_002352_040 0.3327041899 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
14 Hb_157340_010 0.3367824324 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
15 Hb_163115_010 0.3462404797 - - -
16 Hb_169488_010 0.3526861547 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
17 Hb_003702_050 0.3544557097 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
18 Hb_000906_050 0.3549014147 - - -
19 Hb_001377_440 0.358599109 - - -
20 Hb_002365_010 0.3587765152 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_110486_010 Hb_110486_010 Hb_046707_010 Hb_046707_010 Hb_110486_010--Hb_046707_010 Hb_033883_050 Hb_033883_050 Hb_110486_010--Hb_033883_050 Hb_037271_010 Hb_037271_010 Hb_110486_010--Hb_037271_010 Hb_001014_200 Hb_001014_200 Hb_110486_010--Hb_001014_200 Hb_000875_100 Hb_000875_100 Hb_110486_010--Hb_000875_100 Hb_121031_010 Hb_121031_010 Hb_110486_010--Hb_121031_010 Hb_046707_010--Hb_037271_010 Hb_046707_010--Hb_121031_010 Hb_046707_010--Hb_000875_100 Hb_034050_010 Hb_034050_010 Hb_046707_010--Hb_034050_010 Hb_004162_300 Hb_004162_300 Hb_046707_010--Hb_004162_300 Hb_033883_050--Hb_001014_200 Hb_174005_010 Hb_174005_010 Hb_033883_050--Hb_174005_010 Hb_000906_050 Hb_000906_050 Hb_033883_050--Hb_000906_050 Hb_011537_120 Hb_011537_120 Hb_033883_050--Hb_011537_120 Hb_053582_010 Hb_053582_010 Hb_033883_050--Hb_053582_010 Hb_037271_010--Hb_034050_010 Hb_037271_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_037271_010--Hb_027014_010 Hb_037271_010--Hb_121031_010 Hb_001014_200--Hb_000875_100 Hb_001014_200--Hb_011537_120 Hb_001014_200--Hb_121031_010 Hb_001014_200--Hb_034050_010 Hb_000875_100--Hb_121031_010 Hb_000875_100--Hb_034050_010 Hb_000875_100--Hb_004162_300 Hb_000875_100--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_000875_100--Hb_163115_010 Hb_121031_010--Hb_034050_010 Hb_121031_010--Hb_004162_300 Hb_121031_010--Hb_027014_010 Hb_121031_010--Hb_163115_010 Hb_183366_010 Hb_183366_010 Hb_121031_010--Hb_183366_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.357572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142145 0 0 0.0465783 0

CAGE analysis