Hb_111036_010

Information

Type -
Description -
Location Contig111036: 616-1400
Sequence    

Annotation

kegg
ID gmx:102662932
description eukaryotic translation initiation factor 6-2-like
nr
ID KHN14735.1
description Eukaryotic translation initiation factor 6-2 [Glycine soja]
swissprot
ID Q9M060
description Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1
trembl
ID A0A0B2Q0A1
description Eukaryotic translation initiation factor 6 OS=Glycine soja GN=EIF6 PE=3 SV=1
Gene Ontology
ID GO:0005730
description eukaryotic translation initiation factor 6-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03434: 1150-1400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111036_010 0.0 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
2 Hb_000270_470 0.0801903861 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
3 Hb_002439_010 0.0821750157 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
4 Hb_000875_080 0.0859340462 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
5 Hb_003942_020 0.0905630604 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_003678_020 0.0905660744 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002271_010 0.091484599 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
8 Hb_000185_050 0.0919867555 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
9 Hb_000948_160 0.0925024171 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
10 Hb_189216_020 0.0946125122 - - PREDICTED: translin [Jatropha curcas]
11 Hb_000329_800 0.0949380041 - - conserved hypothetical protein [Ricinus communis]
12 Hb_163175_010 0.0953474528 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
13 Hb_001599_040 0.0953956341 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
14 Hb_000116_490 0.0969292349 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
15 Hb_000075_040 0.0971910409 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
16 Hb_001472_100 0.0975598843 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
17 Hb_000069_720 0.0976015296 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
18 Hb_001025_090 0.0980967635 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
19 Hb_000126_010 0.0989017134 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
20 Hb_164390_010 0.0990729867 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]

Gene co-expression network

sample Hb_111036_010 Hb_111036_010 Hb_000270_470 Hb_000270_470 Hb_111036_010--Hb_000270_470 Hb_002439_010 Hb_002439_010 Hb_111036_010--Hb_002439_010 Hb_000875_080 Hb_000875_080 Hb_111036_010--Hb_000875_080 Hb_003942_020 Hb_003942_020 Hb_111036_010--Hb_003942_020 Hb_003678_020 Hb_003678_020 Hb_111036_010--Hb_003678_020 Hb_002271_010 Hb_002271_010 Hb_111036_010--Hb_002271_010 Hb_001025_090 Hb_001025_090 Hb_000270_470--Hb_001025_090 Hb_008225_090 Hb_008225_090 Hb_000270_470--Hb_008225_090 Hb_000789_320 Hb_000789_320 Hb_000270_470--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_000270_470--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_000270_470--Hb_000176_020 Hb_000510_340 Hb_000510_340 Hb_002439_010--Hb_000510_340 Hb_000167_010 Hb_000167_010 Hb_002439_010--Hb_000167_010 Hb_001828_180 Hb_001828_180 Hb_002439_010--Hb_001828_180 Hb_004319_080 Hb_004319_080 Hb_002439_010--Hb_004319_080 Hb_003883_060 Hb_003883_060 Hb_002439_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_002439_010--Hb_001301_150 Hb_000336_210 Hb_000336_210 Hb_000875_080--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000875_080--Hb_002272_050 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000297_160 Hb_000297_160 Hb_000875_080--Hb_000297_160 Hb_005271_040 Hb_005271_040 Hb_000875_080--Hb_005271_040 Hb_000875_080--Hb_171900_090 Hb_007163_070 Hb_007163_070 Hb_003942_020--Hb_007163_070 Hb_008554_060 Hb_008554_060 Hb_003942_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003942_020--Hb_011512_070 Hb_189216_020 Hb_189216_020 Hb_003942_020--Hb_189216_020 Hb_000529_030 Hb_000529_030 Hb_003942_020--Hb_000529_030 Hb_146673_010 Hb_146673_010 Hb_003942_020--Hb_146673_010 Hb_000069_720 Hb_000069_720 Hb_003678_020--Hb_000069_720 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_014720_110 Hb_014720_110 Hb_003678_020--Hb_014720_110 Hb_001301_110 Hb_001301_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_003678_020--Hb_189216_020 Hb_002232_360 Hb_002232_360 Hb_002271_010--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002271_010--Hb_001671_100 Hb_002534_120 Hb_002534_120 Hb_002271_010--Hb_002534_120 Hb_002400_340 Hb_002400_340 Hb_002271_010--Hb_002400_340 Hb_000905_110 Hb_000905_110 Hb_002271_010--Hb_000905_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5449 22.083 45.0853 26.2029 22.547 29.4436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2479 52.634 16.1291 44.2493 27.3931

CAGE analysis