Hb_111051_010

Information

Type -
Description -
Location Contig111051: 598-1364
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002526758.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL89
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03439: 1007-1768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111051_010 0.0 - - Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_005550_010 0.1347159261 - - PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
3 Hb_000120_230 0.1370201841 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
4 Hb_008468_030 0.1457390714 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_041201_010 0.1524074078 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
6 Hb_006441_020 0.1550299048 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
7 Hb_013057_020 0.1564823873 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
8 Hb_008246_020 0.1581630835 - - amidophosphoribosyltransferase, putative [Ricinus communis]
9 Hb_005779_030 0.160484305 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
10 Hb_000625_090 0.1630256684 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000792_040 0.1755587335 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
12 Hb_029510_100 0.176333756 - - scab resistance family protein [Populus trichocarpa]
13 Hb_005914_140 0.1784750311 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
14 Hb_001157_200 0.1788638388 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
15 Hb_002122_080 0.1795657543 - - -
16 Hb_001481_150 0.1805798137 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
17 Hb_001006_270 0.1822489973 - - peptide transporter, putative [Ricinus communis]
18 Hb_004480_020 0.1827578906 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
19 Hb_028872_110 0.1844776508 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
20 Hb_007576_200 0.1850581663 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_111051_010 Hb_111051_010 Hb_005550_010 Hb_005550_010 Hb_111051_010--Hb_005550_010 Hb_000120_230 Hb_000120_230 Hb_111051_010--Hb_000120_230 Hb_008468_030 Hb_008468_030 Hb_111051_010--Hb_008468_030 Hb_041201_010 Hb_041201_010 Hb_111051_010--Hb_041201_010 Hb_006441_020 Hb_006441_020 Hb_111051_010--Hb_006441_020 Hb_013057_020 Hb_013057_020 Hb_111051_010--Hb_013057_020 Hb_008246_020 Hb_008246_020 Hb_005550_010--Hb_008246_020 Hb_011512_130 Hb_011512_130 Hb_005550_010--Hb_011512_130 Hb_005550_010--Hb_000120_230 Hb_000792_040 Hb_000792_040 Hb_005550_010--Hb_000792_040 Hb_002631_200 Hb_002631_200 Hb_005550_010--Hb_002631_200 Hb_011287_010 Hb_011287_010 Hb_000120_230--Hb_011287_010 Hb_029510_100 Hb_029510_100 Hb_000120_230--Hb_029510_100 Hb_000120_230--Hb_008468_030 Hb_006683_020 Hb_006683_020 Hb_000120_230--Hb_006683_020 Hb_005914_140 Hb_005914_140 Hb_000120_230--Hb_005914_140 Hb_005970_010 Hb_005970_010 Hb_000120_230--Hb_005970_010 Hb_007576_200 Hb_007576_200 Hb_008468_030--Hb_007576_200 Hb_000649_120 Hb_000649_120 Hb_008468_030--Hb_000649_120 Hb_000056_280 Hb_000056_280 Hb_008468_030--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_008468_030--Hb_000025_400 Hb_000028_340 Hb_000028_340 Hb_008468_030--Hb_000028_340 Hb_000365_050 Hb_000365_050 Hb_041201_010--Hb_000365_050 Hb_001969_080 Hb_001969_080 Hb_041201_010--Hb_001969_080 Hb_001157_200 Hb_001157_200 Hb_041201_010--Hb_001157_200 Hb_041201_010--Hb_000792_040 Hb_000429_050 Hb_000429_050 Hb_041201_010--Hb_000429_050 Hb_006441_020--Hb_013057_020 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_005188_030 Hb_005188_030 Hb_006441_020--Hb_005188_030 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060 Hb_000836_280 Hb_000836_280 Hb_013057_020--Hb_000836_280 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_023344_150 Hb_023344_150 Hb_013057_020--Hb_023344_150 Hb_002781_030 Hb_002781_030 Hb_013057_020--Hb_002781_030 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.314867 1.14838 0.0918945 1.80377 0.236458 0.230511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.558871 0.329276 0.369993 1.18913 0.408115

CAGE analysis