Hb_111198_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig111198: 9051-31159
Sequence    

Annotation

kegg
ID rcu:RCOM_0479530
description hypothetical protein
nr
ID XP_012072857.1
description PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
swissprot
ID Q941Q3
description Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1
trembl
ID A0A067KR25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06908 PE=4 SV=1
Gene Ontology
ID GO:0046872
description enhancer of ag-4 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03446: 14640-14926 , PASA_asmbl_03447: 16492-16614 , PASA_asmbl_03448: 16615-16912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111198_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
2 Hb_031527_020 0.0544318265 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
3 Hb_032202_110 0.0599215975 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_003633_070 0.0675755001 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
5 Hb_002078_110 0.0681646361 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
6 Hb_005489_080 0.0684600651 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010738_010 0.0697076318 - - PREDICTED: B2 protein [Jatropha curcas]
8 Hb_000130_240 0.0722425285 - - hypothetical protein RCOM_1520720 [Ricinus communis]
9 Hb_000070_080 0.0722868446 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
10 Hb_000308_030 0.0732258974 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
11 Hb_000179_030 0.0735025049 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
12 Hb_000732_120 0.0735903905 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
13 Hb_000291_060 0.0750055148 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
14 Hb_000116_060 0.0754294324 - - plant ubiquilin, putative [Ricinus communis]
15 Hb_000261_220 0.0763721579 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
16 Hb_002272_020 0.0764304988 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
17 Hb_003785_040 0.0764609736 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
18 Hb_002686_250 0.0770246206 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
19 Hb_001247_130 0.0771634843 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
20 Hb_001728_050 0.077440286 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]

Gene co-expression network

sample Hb_111198_010 Hb_111198_010 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_032202_110--Hb_010738_010 Hb_000300_360 Hb_000300_360 Hb_032202_110--Hb_000300_360 Hb_011386_040 Hb_011386_040 Hb_032202_110--Hb_011386_040 Hb_007982_070 Hb_007982_070 Hb_032202_110--Hb_007982_070 Hb_000771_180 Hb_000771_180 Hb_032202_110--Hb_000771_180 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_002835_230 Hb_002835_230 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_005489_080--Hb_003785_040 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_005883_010 Hb_005883_010 Hb_010738_010--Hb_005883_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_000283_130 Hb_000283_130 Hb_010738_010--Hb_000283_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7723 34.9837 24.4224 13.9436 29.1688 31.6268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3555 20.723 16.899 15.7727 11.6122

CAGE analysis