Hb_111582_010

Information

Type -
Description -
Location Contig111582: 1-560
Sequence    

Annotation

kegg
ID pop:POPTR_0303s002201
description hypothetical protein
nr
ID XP_006388173.1
description hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
swissprot
ID Q9LQV2
description RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1
trembl
ID U7DY65
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0303s002201g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable rna-dependent rna polymerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111582_010 0.0 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
2 Hb_000649_030 0.0986487189 - - scab resistance family protein [Populus trichocarpa]
3 Hb_001221_480 0.1131706484 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_003807_020 0.1156631126 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
5 Hb_009581_050 0.1164086571 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
6 Hb_000335_050 0.1174145553 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
7 Hb_010926_010 0.1212341192 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
8 Hb_142332_010 0.1226181876 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
9 Hb_002007_140 0.1234287698 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
10 Hb_002150_010 0.1268473509 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
11 Hb_003052_120 0.1270346873 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
12 Hb_000407_080 0.1288676665 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
13 Hb_012807_060 0.1294115326 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_013914_020 0.1324797692 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_000852_050 0.1350354834 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
16 Hb_000579_180 0.1370683025 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
17 Hb_000934_290 0.1373822484 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001638_110 0.1381535284 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017866_020 0.1385767377 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
20 Hb_019229_020 0.1416980887 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_111582_010 Hb_111582_010 Hb_000649_030 Hb_000649_030 Hb_111582_010--Hb_000649_030 Hb_001221_480 Hb_001221_480 Hb_111582_010--Hb_001221_480 Hb_003807_020 Hb_003807_020 Hb_111582_010--Hb_003807_020 Hb_009581_050 Hb_009581_050 Hb_111582_010--Hb_009581_050 Hb_000335_050 Hb_000335_050 Hb_111582_010--Hb_000335_050 Hb_010926_010 Hb_010926_010 Hb_111582_010--Hb_010926_010 Hb_000237_150 Hb_000237_150 Hb_000649_030--Hb_000237_150 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000238_060 Hb_000238_060 Hb_000649_030--Hb_000238_060 Hb_000616_050 Hb_000616_050 Hb_000649_030--Hb_000616_050 Hb_019229_020 Hb_019229_020 Hb_000649_030--Hb_019229_020 Hb_001221_480--Hb_003807_020 Hb_001221_480--Hb_000649_030 Hb_004447_020 Hb_004447_020 Hb_001221_480--Hb_004447_020 Hb_001221_480--Hb_000335_050 Hb_001454_410 Hb_001454_410 Hb_001221_480--Hb_001454_410 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_003807_020--Hb_004447_020 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_012807_060 Hb_012807_060 Hb_009581_050--Hb_012807_060 Hb_009581_050--Hb_002007_140 Hb_009581_050--Hb_000335_050 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_002391_350 Hb_000335_050--Hb_000579_180 Hb_000335_050--Hb_004447_020 Hb_010926_010--Hb_000579_180 Hb_006711_020 Hb_006711_020 Hb_010926_010--Hb_006711_020 Hb_010926_010--Hb_003807_020 Hb_010926_010--Hb_012807_060 Hb_001421_010 Hb_001421_010 Hb_010926_010--Hb_001421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.5806 0.535058 1.47857 0 0.180454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.39643 0.225208

CAGE analysis