Hb_111693_010

Information

Type -
Description -
Location Contig111693: 6045-7295
Sequence    

Annotation

kegg
ID cic:CICLE_v10018344mg
description hypothetical protein
nr
ID KDP21179.1
description hypothetical protein JCGZ_21650 [Jatropha curcas]
swissprot
ID D4N502
description Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1
trembl
ID A0A067JNV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21650 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03527: 5498-6372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111693_010 0.0 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
2 Hb_004055_080 0.0368248602 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_000220_170 0.0500690404 - - -
4 Hb_058526_010 0.0988910584 - - -
5 Hb_005653_100 0.104113376 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
6 Hb_001789_010 0.1054770887 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
7 Hb_000029_420 0.108544792 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
8 Hb_111985_160 0.1099256182 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
9 Hb_111985_120 0.1100320691 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
10 Hb_001609_080 0.1169384299 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
11 Hb_001473_100 0.1306674582 - - chalcone synthase 1 [Jatropha curcas]
12 Hb_001377_480 0.1383965977 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
13 Hb_003166_040 0.139669319 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
14 Hb_003064_010 0.1427287781 - - Senescence-related gene 1 [Theobroma cacao]
15 Hb_000288_140 0.1444534904 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
16 Hb_002553_100 0.1451631841 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
17 Hb_127743_030 0.1455605703 - - amino acid transporter, putative [Ricinus communis]
18 Hb_002374_110 0.148625651 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
19 Hb_000407_110 0.1507984924 - - ripening-induced ACC oxidase [Carica papaya]
20 Hb_187211_010 0.1564827152 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]

Gene co-expression network

sample Hb_111693_010 Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_111693_010--Hb_004055_080 Hb_000220_170 Hb_000220_170 Hb_111693_010--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_111693_010--Hb_058526_010 Hb_005653_100 Hb_005653_100 Hb_111693_010--Hb_005653_100 Hb_001789_010 Hb_001789_010 Hb_111693_010--Hb_001789_010 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420 Hb_004055_080--Hb_000220_170 Hb_004055_080--Hb_058526_010 Hb_004055_080--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_004055_080--Hb_001473_100 Hb_004055_080--Hb_005653_100 Hb_002553_100 Hb_002553_100 Hb_000220_170--Hb_002553_100 Hb_000220_170--Hb_001789_010 Hb_111985_120 Hb_111985_120 Hb_000220_170--Hb_111985_120 Hb_000220_170--Hb_058526_010 Hb_003166_040 Hb_003166_040 Hb_058526_010--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_058526_010--Hb_127743_030 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_058526_010--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_058526_010--Hb_002374_110 Hb_001609_080 Hb_001609_080 Hb_005653_100--Hb_001609_080 Hb_000407_110 Hb_000407_110 Hb_005653_100--Hb_000407_110 Hb_020902_020 Hb_020902_020 Hb_005653_100--Hb_020902_020 Hb_006919_010 Hb_006919_010 Hb_005653_100--Hb_006919_010 Hb_001789_010--Hb_111985_120 Hb_001377_480 Hb_001377_480 Hb_001789_010--Hb_001377_480 Hb_187211_010 Hb_187211_010 Hb_001789_010--Hb_187211_010 Hb_001789_010--Hb_002553_100 Hb_000194_080 Hb_000194_080 Hb_000029_420--Hb_000194_080 Hb_111985_160 Hb_111985_160 Hb_000029_420--Hb_111985_160 Hb_003064_010 Hb_003064_010 Hb_000029_420--Hb_003064_010 Hb_000029_420--Hb_001377_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.26012 0.467555 0.185706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.39819 0

CAGE analysis