Hb_111722_010

Information

Type -
Description -
Location Contig111722: 455-1317
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12430g
description POPTRDRAFT_566513; hypothetical protein
nr
ID XP_012072196.1
description PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
swissprot
ID P08452
description Uncharacterized lipoprotein syc1174_c OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1174_c PE=3 SV=2
trembl
ID A0A067KSQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04681 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111722_010 0.0 - - PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
2 Hb_003440_060 0.1235929017 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
3 Hb_000270_290 0.1316133595 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
4 Hb_000046_330 0.1397396475 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
5 Hb_002811_160 0.1427820046 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
6 Hb_000074_080 0.1430440398 - - unknown [Populus trichocarpa]
7 Hb_004330_090 0.1431113713 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
8 Hb_002893_070 0.1437354508 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
9 Hb_001579_270 0.143796652 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
10 Hb_002338_020 0.1440003163 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
11 Hb_004837_030 0.1440160374 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
12 Hb_054865_120 0.1449476448 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
13 Hb_001579_230 0.145397582 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
14 Hb_000731_160 0.1456534377 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
15 Hb_001922_170 0.1459229567 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
16 Hb_001097_100 0.1471066971 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
17 Hb_002820_050 0.1473877697 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
18 Hb_008642_040 0.1479044712 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
19 Hb_002687_130 0.1481992576 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
20 Hb_005847_060 0.1496408811 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]

Gene co-expression network

sample Hb_111722_010 Hb_111722_010 Hb_003440_060 Hb_003440_060 Hb_111722_010--Hb_003440_060 Hb_000270_290 Hb_000270_290 Hb_111722_010--Hb_000270_290 Hb_000046_330 Hb_000046_330 Hb_111722_010--Hb_000046_330 Hb_002811_160 Hb_002811_160 Hb_111722_010--Hb_002811_160 Hb_000074_080 Hb_000074_080 Hb_111722_010--Hb_000074_080 Hb_004330_090 Hb_004330_090 Hb_111722_010--Hb_004330_090 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_002811_130 Hb_002811_130 Hb_000270_290--Hb_002811_130 Hb_000256_200 Hb_000256_200 Hb_000270_290--Hb_000256_200 Hb_017987_030 Hb_017987_030 Hb_000270_290--Hb_017987_030 Hb_000270_290--Hb_000074_080 Hb_011021_020 Hb_011021_020 Hb_000270_290--Hb_011021_020 Hb_001579_270 Hb_001579_270 Hb_000270_290--Hb_001579_270 Hb_001205_300 Hb_001205_300 Hb_000046_330--Hb_001205_300 Hb_028960_020 Hb_028960_020 Hb_000046_330--Hb_028960_020 Hb_000212_440 Hb_000212_440 Hb_000046_330--Hb_000212_440 Hb_041290_020 Hb_041290_020 Hb_000046_330--Hb_041290_020 Hb_001040_100 Hb_001040_100 Hb_000046_330--Hb_001040_100 Hb_000010_140 Hb_000010_140 Hb_000046_330--Hb_000010_140 Hb_002333_060 Hb_002333_060 Hb_002811_160--Hb_002333_060 Hb_107879_010 Hb_107879_010 Hb_002811_160--Hb_107879_010 Hb_000061_020 Hb_000061_020 Hb_002811_160--Hb_000061_020 Hb_007192_070 Hb_007192_070 Hb_002811_160--Hb_007192_070 Hb_022693_140 Hb_022693_140 Hb_002811_160--Hb_022693_140 Hb_002811_160--Hb_000212_440 Hb_001247_310 Hb_001247_310 Hb_000074_080--Hb_001247_310 Hb_001119_060 Hb_001119_060 Hb_000074_080--Hb_001119_060 Hb_000181_130 Hb_000181_130 Hb_000074_080--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000074_080--Hb_009328_020 Hb_000074_080--Hb_007192_070 Hb_000915_260 Hb_000915_260 Hb_000074_080--Hb_000915_260 Hb_002553_060 Hb_002553_060 Hb_004330_090--Hb_002553_060 Hb_000137_040 Hb_000137_040 Hb_004330_090--Hb_000137_040 Hb_001021_150 Hb_001021_150 Hb_004330_090--Hb_001021_150 Hb_000227_170 Hb_000227_170 Hb_004330_090--Hb_000227_170 Hb_000676_120 Hb_000676_120 Hb_004330_090--Hb_000676_120 Hb_189216_020 Hb_189216_020 Hb_004330_090--Hb_189216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.841374 0.208614 1.76764 0.885317 1.75897 1.84313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84908 1.74338 0.331561 1.12224 1.6479

CAGE analysis