Hb_111834_010

Information

Type -
Description -
Location Contig111834: 202-1184
Sequence    

Annotation

kegg
ID rcu:RCOM_1613520
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_012083498.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111834_010 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_004282_030 0.2182425385 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
3 Hb_000004_140 0.2213012338 - - -
4 Hb_076583_010 0.2508437665 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
5 Hb_074701_010 0.2512053619 - - -
6 Hb_064951_010 0.2534555872 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
7 Hb_011794_020 0.2609679016 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_010997_050 0.2621787541 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
9 Hb_124567_010 0.263736715 - - -
10 Hb_115578_010 0.2679549284 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
11 Hb_012340_040 0.2767039896 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
12 Hb_004829_020 0.2794456908 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_098842_010 0.2814744708 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
14 Hb_001439_030 0.2828254892 - - -
15 Hb_002194_070 0.2864385491 - - -
16 Hb_003636_050 0.2898922019 - - PREDICTED: bark storage protein A-like [Populus euphratica]
17 Hb_002249_110 0.2931189313 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
18 Hb_030215_010 0.2939006608 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_008053_020 0.2961741909 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_066784_020 0.2964087304 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_111834_010 Hb_111834_010 Hb_004282_030 Hb_004282_030 Hb_111834_010--Hb_004282_030 Hb_000004_140 Hb_000004_140 Hb_111834_010--Hb_000004_140 Hb_076583_010 Hb_076583_010 Hb_111834_010--Hb_076583_010 Hb_074701_010 Hb_074701_010 Hb_111834_010--Hb_074701_010 Hb_064951_010 Hb_064951_010 Hb_111834_010--Hb_064951_010 Hb_011794_020 Hb_011794_020 Hb_111834_010--Hb_011794_020 Hb_010997_050 Hb_010997_050 Hb_004282_030--Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_004282_030--Hb_098842_010 Hb_004282_030--Hb_000004_140 Hb_004829_020 Hb_004829_020 Hb_004282_030--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004282_030--Hb_012340_040 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010 Hb_000004_140--Hb_010997_050 Hb_000004_140--Hb_098842_010 Hb_000004_140--Hb_076583_010 Hb_128173_010 Hb_128173_010 Hb_000004_140--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_000004_140--Hb_007761_010 Hb_076583_010--Hb_064951_010 Hb_076583_010--Hb_010997_050 Hb_009268_110 Hb_009268_110 Hb_076583_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_076583_010--Hb_089491_010 Hb_013727_010 Hb_013727_010 Hb_076583_010--Hb_013727_010 Hb_003529_210 Hb_003529_210 Hb_076583_010--Hb_003529_210 Hb_004429_030 Hb_004429_030 Hb_074701_010--Hb_004429_030 Hb_057746_010 Hb_057746_010 Hb_074701_010--Hb_057746_010 Hb_001711_070 Hb_001711_070 Hb_074701_010--Hb_001711_070 Hb_001023_020 Hb_001023_020 Hb_074701_010--Hb_001023_020 Hb_065395_010 Hb_065395_010 Hb_074701_010--Hb_065395_010 Hb_066784_020 Hb_066784_020 Hb_064951_010--Hb_066784_020 Hb_064951_010--Hb_003529_210 Hb_064951_010--Hb_010997_050 Hb_064951_010--Hb_089491_010 Hb_064951_010--Hb_009268_110 Hb_115578_010 Hb_115578_010 Hb_011794_020--Hb_115578_010 Hb_008053_020 Hb_008053_020 Hb_011794_020--Hb_008053_020 Hb_130134_030 Hb_130134_030 Hb_011794_020--Hb_130134_030 Hb_002249_110 Hb_002249_110 Hb_011794_020--Hb_002249_110 Hb_130134_020 Hb_130134_020 Hb_011794_020--Hb_130134_020 Hb_001385_090 Hb_001385_090 Hb_011794_020--Hb_001385_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.543877 0.346661 0.463428 0 1.94001 7.25596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.471551 0

CAGE analysis