Hb_111834_020

Information

Type -
Description -
Location Contig111834: 2325-3219
Sequence    

Annotation

kegg
ID cit:102618805
description protein phosphatase methylesterase 1-like
nr
ID XP_012077178.1
description PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEF0
description Protein phosphatase methylesterase 1 OS=Jatropha curcas GN=JCGZ_17225 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03579: 2232-2445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111834_020 0.0 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
2 Hb_000407_060 0.2595553722 - - -
3 Hb_000248_120 0.2651454856 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
4 Hb_012052_030 0.289791373 - - -
5 Hb_000217_060 0.293474616 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_010447_020 0.3064259869 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
7 Hb_065395_010 0.309558815 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
8 Hb_007527_030 0.3099089599 - - -
9 Hb_074701_010 0.3123130282 - - -
10 Hb_027337_070 0.3159270302 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
11 Hb_002367_120 0.3194529506 - - -
12 Hb_018118_020 0.3242963167 - - unnamed protein product [Vitis vinifera]
13 Hb_000915_150 0.3248458491 - - -
14 Hb_097433_020 0.3299861119 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_164225_010 0.3378683897 - - -
16 Hb_004429_030 0.3383894757 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
17 Hb_003391_050 0.344608946 - - -
18 Hb_057247_010 0.3452213857 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
19 Hb_003238_010 0.3454221962 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
20 Hb_057217_010 0.3474908672 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]

Gene co-expression network

sample Hb_111834_020 Hb_111834_020 Hb_000407_060 Hb_000407_060 Hb_111834_020--Hb_000407_060 Hb_000248_120 Hb_000248_120 Hb_111834_020--Hb_000248_120 Hb_012052_030 Hb_012052_030 Hb_111834_020--Hb_012052_030 Hb_000217_060 Hb_000217_060 Hb_111834_020--Hb_000217_060 Hb_010447_020 Hb_010447_020 Hb_111834_020--Hb_010447_020 Hb_065395_010 Hb_065395_010 Hb_111834_020--Hb_065395_010 Hb_002367_120 Hb_002367_120 Hb_000407_060--Hb_002367_120 Hb_172632_020 Hb_172632_020 Hb_000407_060--Hb_172632_020 Hb_027337_070 Hb_027337_070 Hb_000407_060--Hb_027337_070 Hb_004361_030 Hb_004361_030 Hb_000407_060--Hb_004361_030 Hb_000407_060--Hb_000248_120 Hb_057217_010 Hb_057217_010 Hb_000407_060--Hb_057217_010 Hb_012103_010 Hb_012103_010 Hb_000248_120--Hb_012103_010 Hb_000175_550 Hb_000175_550 Hb_000248_120--Hb_000175_550 Hb_003238_010 Hb_003238_010 Hb_000248_120--Hb_003238_010 Hb_000701_070 Hb_000701_070 Hb_000248_120--Hb_000701_070 Hb_007527_030 Hb_007527_030 Hb_012052_030--Hb_007527_030 Hb_001486_140 Hb_001486_140 Hb_012052_030--Hb_001486_140 Hb_004800_210 Hb_004800_210 Hb_012052_030--Hb_004800_210 Hb_012052_030--Hb_002367_120 Hb_012052_030--Hb_057217_010 Hb_007441_060 Hb_007441_060 Hb_012052_030--Hb_007441_060 Hb_157846_010 Hb_157846_010 Hb_000217_060--Hb_157846_010 Hb_001396_150 Hb_001396_150 Hb_000217_060--Hb_001396_150 Hb_049160_010 Hb_049160_010 Hb_000217_060--Hb_049160_010 Hb_084858_010 Hb_084858_010 Hb_000217_060--Hb_084858_010 Hb_007846_040 Hb_007846_040 Hb_000217_060--Hb_007846_040 Hb_134894_010 Hb_134894_010 Hb_000217_060--Hb_134894_010 Hb_010565_020 Hb_010565_020 Hb_010447_020--Hb_010565_020 Hb_033926_010 Hb_033926_010 Hb_010447_020--Hb_033926_010 Hb_003772_020 Hb_003772_020 Hb_010447_020--Hb_003772_020 Hb_012107_070 Hb_012107_070 Hb_010447_020--Hb_012107_070 Hb_006230_040 Hb_006230_040 Hb_010447_020--Hb_006230_040 Hb_055339_010 Hb_055339_010 Hb_010447_020--Hb_055339_010 Hb_000217_050 Hb_000217_050 Hb_065395_010--Hb_000217_050 Hb_007021_030 Hb_007021_030 Hb_065395_010--Hb_007021_030 Hb_005715_020 Hb_005715_020 Hb_065395_010--Hb_005715_020 Hb_074701_010 Hb_074701_010 Hb_065395_010--Hb_074701_010 Hb_138652_020 Hb_138652_020 Hb_065395_010--Hb_138652_020 Hb_057746_010 Hb_057746_010 Hb_065395_010--Hb_057746_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398623 0.77512 0.731382 0 0 1.60444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.516055 0

CAGE analysis