Hb_111876_010

Information

Type -
Description -
Location Contig111876: 681-1209
Sequence    

Annotation

kegg
ID rcu:RCOM_0496620
description Auxin response factor, putative
nr
ID XP_002527835.1
description Auxin response factor, putative [Ricinus communis]
swissprot
ID Q0JCZ4
description Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1
trembl
ID B9SPB6
description Auxin response factor OS=Ricinus communis GN=RCOM_0496620 PE=3 SV=1
Gene Ontology
ID GO:0005488
description auxin response factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03584: 538-848 , PASA_asmbl_03585: 861-1249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111876_010 0.0 - - Auxin response factor, putative [Ricinus communis]
2 Hb_000122_060 0.2272085353 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
3 Hb_002039_050 0.2338913568 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
4 Hb_000035_310 0.2495122176 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
5 Hb_125948_010 0.2620094004 - - heat-shock protein, putative [Ricinus communis]
6 Hb_004374_130 0.2679681534 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_000979_010 0.2715192661 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
8 Hb_009693_030 0.2790436243 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005504_020 0.2800226861 - - -
10 Hb_001257_090 0.2824173419 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
11 Hb_120662_010 0.2837481351 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
12 Hb_001882_110 0.2849408591 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_000869_060 0.2864336476 - - hypothetical protein L484_003245 [Morus notabilis]
14 Hb_008054_050 0.2876263748 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
15 Hb_006483_030 0.2899826938 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_000258_360 0.2918357633 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
17 Hb_050686_010 0.2934333882 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004935_080 0.2954536537 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
19 Hb_179679_010 0.2961804939 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
20 Hb_101020_010 0.2966294155 - - -

Gene co-expression network

sample Hb_111876_010 Hb_111876_010 Hb_000122_060 Hb_000122_060 Hb_111876_010--Hb_000122_060 Hb_002039_050 Hb_002039_050 Hb_111876_010--Hb_002039_050 Hb_000035_310 Hb_000035_310 Hb_111876_010--Hb_000035_310 Hb_125948_010 Hb_125948_010 Hb_111876_010--Hb_125948_010 Hb_004374_130 Hb_004374_130 Hb_111876_010--Hb_004374_130 Hb_000979_010 Hb_000979_010 Hb_111876_010--Hb_000979_010 Hb_000122_060--Hb_125948_010 Hb_000122_060--Hb_002039_050 Hb_044653_010 Hb_044653_010 Hb_000122_060--Hb_044653_010 Hb_003438_060 Hb_003438_060 Hb_000122_060--Hb_003438_060 Hb_001506_030 Hb_001506_030 Hb_000122_060--Hb_001506_030 Hb_011164_010 Hb_011164_010 Hb_002039_050--Hb_011164_010 Hb_002999_060 Hb_002999_060 Hb_002039_050--Hb_002999_060 Hb_006745_010 Hb_006745_010 Hb_002039_050--Hb_006745_010 Hb_000062_030 Hb_000062_030 Hb_002039_050--Hb_000062_030 Hb_001504_090 Hb_001504_090 Hb_002039_050--Hb_001504_090 Hb_013394_060 Hb_013394_060 Hb_002039_050--Hb_013394_060 Hb_120662_010 Hb_120662_010 Hb_000035_310--Hb_120662_010 Hb_004994_340 Hb_004994_340 Hb_000035_310--Hb_004994_340 Hb_002411_130 Hb_002411_130 Hb_000035_310--Hb_002411_130 Hb_000001_160 Hb_000001_160 Hb_000035_310--Hb_000001_160 Hb_009119_030 Hb_009119_030 Hb_000035_310--Hb_009119_030 Hb_003492_010 Hb_003492_010 Hb_000035_310--Hb_003492_010 Hb_125948_010--Hb_044653_010 Hb_002984_020 Hb_002984_020 Hb_125948_010--Hb_002984_020 Hb_125948_010--Hb_002039_050 Hb_002431_010 Hb_002431_010 Hb_125948_010--Hb_002431_010 Hb_001103_070 Hb_001103_070 Hb_125948_010--Hb_001103_070 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_009393_200 Hb_009393_200 Hb_004374_130--Hb_009393_200 Hb_008054_050 Hb_008054_050 Hb_004374_130--Hb_008054_050 Hb_009222_070 Hb_009222_070 Hb_004374_130--Hb_009222_070 Hb_145317_010 Hb_145317_010 Hb_004374_130--Hb_145317_010 Hb_083628_010 Hb_083628_010 Hb_004374_130--Hb_083628_010 Hb_001367_010 Hb_001367_010 Hb_000979_010--Hb_001367_010 Hb_005618_060 Hb_005618_060 Hb_000979_010--Hb_005618_060 Hb_002570_010 Hb_002570_010 Hb_000979_010--Hb_002570_010 Hb_091761_010 Hb_091761_010 Hb_000979_010--Hb_091761_010 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.979386 0.921455 0.678341 2.37703 2.37136 1.30478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.392019 0 0 0

CAGE analysis