Hb_111985_010

Information

Type -
Description -
Location Contig111985: 6194-6594
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_010 0.0 - - -
2 Hb_004361_010 0.2316951366 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
3 Hb_000836_100 0.2393531493 - - conserved hypothetical protein [Ricinus communis]
4 Hb_176685_010 0.2694399085 - - receptor-type protein kinase LRK1-like [Oryza sativa Japonica Group]
5 Hb_174547_010 0.3092352417 - - -
6 Hb_003266_040 0.3147125646 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
7 Hb_000869_060 0.3173325621 - - hypothetical protein L484_003245 [Morus notabilis]
8 Hb_002188_020 0.3260668226 - - unnamed protein product [Vitis vinifera]
9 Hb_009848_020 0.3315890828 - - hypothetical protein VITISV_026702 [Vitis vinifera]
10 Hb_002546_040 0.3348599606 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]
11 Hb_007889_050 0.3382272316 - - Kynurenine formamidase [Gossypium arboreum]
12 Hb_151463_010 0.3429233552 - - hypothetical protein B456_004G013100 [Gossypium raimondii]
13 Hb_001823_080 0.3444870803 - - hypothetical protein VITISV_012142 [Vitis vinifera]
14 Hb_058702_020 0.34595942 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
15 Hb_001379_070 0.3473374066 - - hypothetical protein JCGZ_16377 [Jatropha curcas]
16 Hb_010254_020 0.3526691292 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_004705_090 0.3539654402 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000679_200 0.3543728402 - - EIN3-binding F box protein 1 [Theobroma cacao]
19 Hb_157968_010 0.3544578572 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_182823_010 0.3557235847 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_111985_010 Hb_111985_010 Hb_004361_010 Hb_004361_010 Hb_111985_010--Hb_004361_010 Hb_000836_100 Hb_000836_100 Hb_111985_010--Hb_000836_100 Hb_176685_010 Hb_176685_010 Hb_111985_010--Hb_176685_010 Hb_174547_010 Hb_174547_010 Hb_111985_010--Hb_174547_010 Hb_003266_040 Hb_003266_040 Hb_111985_010--Hb_003266_040 Hb_000869_060 Hb_000869_060 Hb_111985_010--Hb_000869_060 Hb_002546_040 Hb_002546_040 Hb_004361_010--Hb_002546_040 Hb_000733_270 Hb_000733_270 Hb_004361_010--Hb_000733_270 Hb_009848_020 Hb_009848_020 Hb_004361_010--Hb_009848_020 Hb_084470_010 Hb_084470_010 Hb_004361_010--Hb_084470_010 Hb_000679_200 Hb_000679_200 Hb_004361_010--Hb_000679_200 Hb_000836_100--Hb_174547_010 Hb_007889_050 Hb_007889_050 Hb_000836_100--Hb_007889_050 Hb_001506_030 Hb_001506_030 Hb_000836_100--Hb_001506_030 Hb_044653_010 Hb_044653_010 Hb_000836_100--Hb_044653_010 Hb_003438_060 Hb_003438_060 Hb_000836_100--Hb_003438_060 Hb_011206_020 Hb_011206_020 Hb_176685_010--Hb_011206_020 Hb_007083_020 Hb_007083_020 Hb_176685_010--Hb_007083_020 Hb_176685_010--Hb_003266_040 Hb_176685_010--Hb_004361_010 Hb_001950_040 Hb_001950_040 Hb_176685_010--Hb_001950_040 Hb_027287_010 Hb_027287_010 Hb_174547_010--Hb_027287_010 Hb_106873_020 Hb_106873_020 Hb_174547_010--Hb_106873_020 Hb_000066_180 Hb_000066_180 Hb_174547_010--Hb_000066_180 Hb_174547_010--Hb_007889_050 Hb_002078_190 Hb_002078_190 Hb_174547_010--Hb_002078_190 Hb_179812_010 Hb_179812_010 Hb_003266_040--Hb_179812_010 Hb_003266_040--Hb_007083_020 Hb_005542_090 Hb_005542_090 Hb_003266_040--Hb_005542_090 Hb_141132_010 Hb_141132_010 Hb_003266_040--Hb_141132_010 Hb_121467_010 Hb_121467_010 Hb_003266_040--Hb_121467_010 Hb_106415_010 Hb_106415_010 Hb_003266_040--Hb_106415_010 Hb_009119_030 Hb_009119_030 Hb_000869_060--Hb_009119_030 Hb_004935_080 Hb_004935_080 Hb_000869_060--Hb_004935_080 Hb_000130_190 Hb_000130_190 Hb_000869_060--Hb_000130_190 Hb_001252_200 Hb_001252_200 Hb_000869_060--Hb_001252_200 Hb_144550_020 Hb_144550_020 Hb_000869_060--Hb_144550_020 Hb_169329_010 Hb_169329_010 Hb_000869_060--Hb_169329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13725 0 0.353088 0.252522 0.346472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.105236 0

CAGE analysis