Hb_111985_030

Information

Type -
Description -
Location Contig111985: 18157-23752
Sequence    

Annotation

kegg
ID cit:102623944
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006480844.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A067D4V7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047084mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_030 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_004566_050 0.0004155078 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001318_060 0.0166341002 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
4 Hb_003410_020 0.0215475718 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_034909_010 0.0216643303 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_010435_010 0.0252719782 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_071998_010 0.0498355672 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
8 Hb_011888_010 0.053802828 - - Receptor like protein 46, putative [Theobroma cacao]
9 Hb_000417_330 0.0698390918 - - -
10 Hb_008576_010 0.076091407 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_149253_010 0.0803198373 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
12 Hb_003943_060 0.0811045932 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
13 Hb_012438_020 0.0824303719 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001383_040 0.0828371217 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
15 Hb_144813_010 0.0864249067 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
16 Hb_003582_050 0.0995834616 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
17 Hb_127835_030 0.1007107731 - - -
18 Hb_002836_030 0.103357071 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_160879_010 0.1096796528 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
20 Hb_004553_010 0.1134291247 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_111985_030 Hb_111985_030 Hb_004566_050 Hb_004566_050 Hb_111985_030--Hb_004566_050 Hb_001318_060 Hb_001318_060 Hb_111985_030--Hb_001318_060 Hb_003410_020 Hb_003410_020 Hb_111985_030--Hb_003410_020 Hb_034909_010 Hb_034909_010 Hb_111985_030--Hb_034909_010 Hb_010435_010 Hb_010435_010 Hb_111985_030--Hb_010435_010 Hb_071998_010 Hb_071998_010 Hb_111985_030--Hb_071998_010 Hb_004566_050--Hb_001318_060 Hb_004566_050--Hb_003410_020 Hb_004566_050--Hb_034909_010 Hb_004566_050--Hb_010435_010 Hb_004566_050--Hb_071998_010 Hb_001318_060--Hb_010435_010 Hb_001318_060--Hb_003410_020 Hb_001318_060--Hb_034909_010 Hb_000417_330 Hb_000417_330 Hb_001318_060--Hb_000417_330 Hb_003410_020--Hb_034909_010 Hb_003410_020--Hb_071998_010 Hb_011888_010 Hb_011888_010 Hb_003410_020--Hb_011888_010 Hb_034909_010--Hb_071998_010 Hb_034909_010--Hb_011888_010 Hb_010435_010--Hb_000417_330 Hb_010435_010--Hb_003410_020 Hb_010435_010--Hb_034909_010 Hb_071998_010--Hb_011888_010 Hb_144813_010 Hb_144813_010 Hb_071998_010--Hb_144813_010 Hb_003582_050 Hb_003582_050 Hb_071998_010--Hb_003582_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0158081 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0203556

CAGE analysis