Hb_111985_050

Information

Type -
Description -
Location Contig111985: 31191-35846
Sequence    

Annotation

kegg
ID rcu:RCOM_1595800
description uroporphyrin-III methyltransferase, putative
nr
ID XP_002510449.1
description uroporphyrin-III methyltransferase, putative [Ricinus communis]
swissprot
ID P74038
description Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1
trembl
ID B9R806
description Uroporphyrin-III methyltransferase, putative OS=Ricinus communis GN=RCOM_1595800 PE=3 SV=1
Gene Ontology
ID GO:0008152
description tetrapyrrole (corrin porphyrin) methylases

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03608: 32081-33726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_050 0.0 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
2 Hb_017904_010 0.0791161481 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
3 Hb_007389_010 0.0826735732 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
4 Hb_003020_020 0.0830762988 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
5 Hb_009694_010 0.086678933 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001959_070 0.0962982529 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
7 Hb_004837_030 0.0965932215 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
8 Hb_007632_030 0.0971476296 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
9 Hb_000768_170 0.0988392145 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
10 Hb_012799_180 0.1048753503 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
11 Hb_008554_030 0.1067738464 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
12 Hb_005054_060 0.1092403127 - - PREDICTED: syntaxin-81 [Jatropha curcas]
13 Hb_000173_290 0.1093693125 - - guanylate kinase, putative [Ricinus communis]
14 Hb_002044_080 0.1096510578 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
15 Hb_003728_080 0.1100511103 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
16 Hb_004841_010 0.1113876061 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
17 Hb_001821_010 0.1116383736 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
18 Hb_000270_260 0.1118681851 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
19 Hb_002963_020 0.1119997347 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000120_790 0.1124974751 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_111985_050 Hb_111985_050 Hb_017904_010 Hb_017904_010 Hb_111985_050--Hb_017904_010 Hb_007389_010 Hb_007389_010 Hb_111985_050--Hb_007389_010 Hb_003020_020 Hb_003020_020 Hb_111985_050--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_111985_050--Hb_009694_010 Hb_001959_070 Hb_001959_070 Hb_111985_050--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_111985_050--Hb_004837_030 Hb_002205_070 Hb_002205_070 Hb_017904_010--Hb_002205_070 Hb_000107_620 Hb_000107_620 Hb_017904_010--Hb_000107_620 Hb_011571_010 Hb_011571_010 Hb_017904_010--Hb_011571_010 Hb_009838_080 Hb_009838_080 Hb_017904_010--Hb_009838_080 Hb_002044_080 Hb_002044_080 Hb_017904_010--Hb_002044_080 Hb_000866_260 Hb_000866_260 Hb_007389_010--Hb_000866_260 Hb_000614_160 Hb_000614_160 Hb_007389_010--Hb_000614_160 Hb_017358_030 Hb_017358_030 Hb_007389_010--Hb_017358_030 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_002235_250 Hb_002235_250 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_000768_170 Hb_000768_170 Hb_003020_020--Hb_000768_170 Hb_112798_030 Hb_112798_030 Hb_003020_020--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_003020_020--Hb_005186_050 Hb_000251_070 Hb_000251_070 Hb_003020_020--Hb_000251_070 Hb_000347_540 Hb_000347_540 Hb_003020_020--Hb_000347_540 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_001348_180 Hb_001348_180 Hb_001959_070--Hb_001348_180 Hb_000173_290 Hb_000173_290 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_001959_070--Hb_002205_070 Hb_001959_070--Hb_004837_030 Hb_000236_070 Hb_000236_070 Hb_001959_070--Hb_000236_070 Hb_004837_030--Hb_009694_010 Hb_163950_030 Hb_163950_030 Hb_004837_030--Hb_163950_030 Hb_004837_030--Hb_007632_030 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_004837_030--Hb_001348_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.46316 1.3019 3.95326 2.65952 5.23054 5.98265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25132 8.23672 5.44252 1.96911 5.44117

CAGE analysis