Hb_111985_090

Information

Type -
Description -
Location Contig111985: 55753-59039
Sequence    

Annotation

kegg
ID rcu:RCOM_1595950
description hypothetical protein
nr
ID XP_002510454.1
description hypothetical protein RCOM_1595950 [Ricinus communis]
swissprot
ID F4HQX1
description Jacalin-related lectin 3 OS=Arabidopsis thaliana GN=JAL3 PE=2 SV=1
trembl
ID B9R811
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1595950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03613: 55937-58658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_090 0.0 - - hypothetical protein RCOM_1595950 [Ricinus communis]
2 Hb_008566_070 0.0891412004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003906_150 0.111151905 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
4 Hb_006590_040 0.1118095311 - - amino acid permease, putative [Ricinus communis]
5 Hb_005054_010 0.112507686 - - amino acid transporter, putative [Ricinus communis]
6 Hb_002116_020 0.113144952 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
7 Hb_005643_080 0.1201066503 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
8 Hb_008200_010 0.1252535152 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
9 Hb_168031_010 0.1300394261 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
10 Hb_005396_030 0.1311703921 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000604_050 0.1335871151 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
12 Hb_000201_050 0.1352207745 - - -
13 Hb_000007_020 0.1379626448 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_000227_350 0.1400909436 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
15 Hb_000007_470 0.1407231736 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
16 Hb_001502_010 0.1426036323 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
17 Hb_004125_080 0.1449668818 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
18 Hb_004007_190 0.1473377314 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
19 Hb_001318_180 0.1492983568 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
20 Hb_002374_070 0.1502388535 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_111985_090 Hb_111985_090 Hb_008566_070 Hb_008566_070 Hb_111985_090--Hb_008566_070 Hb_003906_150 Hb_003906_150 Hb_111985_090--Hb_003906_150 Hb_006590_040 Hb_006590_040 Hb_111985_090--Hb_006590_040 Hb_005054_010 Hb_005054_010 Hb_111985_090--Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_111985_090--Hb_002116_020 Hb_005643_080 Hb_005643_080 Hb_111985_090--Hb_005643_080 Hb_008200_010 Hb_008200_010 Hb_008566_070--Hb_008200_010 Hb_008566_070--Hb_005643_080 Hb_001502_010 Hb_001502_010 Hb_008566_070--Hb_001502_010 Hb_000227_350 Hb_000227_350 Hb_008566_070--Hb_000227_350 Hb_008566_070--Hb_003906_150 Hb_000604_050 Hb_000604_050 Hb_003906_150--Hb_000604_050 Hb_001318_180 Hb_001318_180 Hb_003906_150--Hb_001318_180 Hb_004007_190 Hb_004007_190 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110 Hb_006590_040--Hb_002116_020 Hb_004125_080 Hb_004125_080 Hb_006590_040--Hb_004125_080 Hb_168031_010 Hb_168031_010 Hb_006590_040--Hb_168031_010 Hb_006590_040--Hb_008200_010 Hb_002411_070 Hb_002411_070 Hb_006590_040--Hb_002411_070 Hb_002374_070 Hb_002374_070 Hb_006590_040--Hb_002374_070 Hb_005054_010--Hb_002116_020 Hb_005054_010--Hb_168031_010 Hb_000373_110 Hb_000373_110 Hb_005054_010--Hb_000373_110 Hb_005054_010--Hb_006590_040 Hb_007885_120 Hb_007885_120 Hb_005054_010--Hb_007885_120 Hb_005054_010--Hb_004125_080 Hb_002116_020--Hb_168031_010 Hb_002116_020--Hb_004125_080 Hb_002116_020--Hb_002411_070 Hb_002116_020--Hb_000373_110 Hb_006951_010 Hb_006951_010 Hb_005643_080--Hb_006951_010 Hb_005643_080--Hb_000604_050 Hb_000201_070 Hb_000201_070 Hb_005643_080--Hb_000201_070 Hb_010267_030 Hb_010267_030 Hb_005643_080--Hb_010267_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107563 18.7379 1.23958 34.4694 0.27243 0.424595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0418223 0 0.47493 3.34289

CAGE analysis