Hb_111985_110

Information

Type -
Description -
Location Contig111985: 70985-72612
Sequence    

Annotation

kegg
ID rcu:RCOM_1595970
description Thioredoxin H-type, putative
nr
ID AEC03317.1
description thioredoxin H-type 3 [Hevea brasiliensis]
swissprot
ID Q43636
description Thioredoxin H-type OS=Ricinus communis PE=3 SV=1
trembl
ID I1SSI8
description Thioredoxin H-type 3 OS=Hevea brasiliensis GN=TrxH3 PE=2 SV=1
Gene Ontology
ID GO:0005829
description thioredoxin h-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03618: 70673-72681
cDNA
(Sanger)
(ID:Location)		 001_L01.ab1: 70814-72681 , 004_B05.ab1: 70775-72678 , 004_F23.ab1: 70795-72684 , 006_E11.ab1: 70876-72678 , 006_I24.ab1: 70780-72681 , 007_L08.ab1: 70876-72678 , 008_I19.ab1: 70875-72678 , 008_J04.ab1: 70877-72678 , 009_J14.ab1: 70770-72681 , 009_L14.ab1: 70876-72681 , 018_E23.ab1: 70798-72618 , 018_H02.ab1: 70897-72681 , 021_A12.ab1: 70872-72681 , 023_I19.ab1: 70937-72681 , 023_I21.ab1: 70878-72681 , 024_D17.ab1: 70880-72678 , 024_J16.ab1: 70876-72682 , 026_M11.ab1: 70885-72676 , 031_N18.ab1: 70775-72678 , 033_B20.ab1: 70876-72678 , 035_B17.ab1: 70781-72681 , 035_D19.ab1: 70812-72681 , 036_J04.ab1: 70798-72684 , 038_O01.ab1: 70800-72684 , 039_H19.ab1: 70876-72681 , 041_E17.ab1: 70800-72684 , 041_O15.ab1: 70814-72681 , 043_D01.ab1: 70798-72681 , 048_G09.ab1: 70781-72681 , 049_F06.ab1: 70798-72678 , 050_E23.ab1: 70876-72678 , 052_O11.ab1: 70900-72681

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_110 0.0 - - thioredoxin H-type 3 [Hevea brasiliensis]
2 Hb_021409_080 0.0762161032 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
3 Hb_000417_100 0.1056790251 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
4 Hb_000407_070 0.110712829 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
5 Hb_004627_030 0.1179986356 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
6 Hb_012305_130 0.1190292404 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
7 Hb_006573_290 0.1303805614 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
8 Hb_002157_040 0.1320153423 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
9 Hb_000217_020 0.1367587675 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
10 Hb_180343_010 0.1402226897 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
11 Hb_002301_160 0.1402938267 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
12 Hb_004032_030 0.1430295142 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
13 Hb_025466_020 0.1433416914 - - tubulin beta-6 [Brassica oleracea var. italica]
14 Hb_000110_120 0.1476992674 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
15 Hb_001269_190 0.1502440564 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
16 Hb_000392_340 0.1509496 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
17 Hb_000590_120 0.1515195031 - - dehydroascorbate reductase, putative [Ricinus communis]
18 Hb_148209_010 0.1530087056 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_002681_200 0.1538447873 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
20 Hb_004800_100 0.155234806 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_111985_110 Hb_111985_110 Hb_021409_080 Hb_021409_080 Hb_111985_110--Hb_021409_080 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_021409_080--Hb_012305_130 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_004032_030 Hb_004032_030 Hb_000417_100--Hb_004032_030 Hb_000359_090 Hb_000359_090 Hb_000417_100--Hb_000359_090 Hb_000136_100 Hb_000136_100 Hb_000417_100--Hb_000136_100 Hb_000417_100--Hb_021409_080 Hb_000521_130 Hb_000521_130 Hb_000417_100--Hb_000521_130 Hb_000407_070--Hb_012305_130 Hb_000407_070--Hb_021409_080 Hb_002301_160 Hb_002301_160 Hb_000407_070--Hb_002301_160 Hb_000407_070--Hb_004627_030 Hb_000009_290 Hb_000009_290 Hb_000407_070--Hb_000009_290 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_004627_030--Hb_002301_160 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_004627_030--Hb_012305_130 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_012305_130--Hb_002110_100 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_006573_290--Hb_021409_080 Hb_002154_110 Hb_002154_110 Hb_006573_290--Hb_002154_110 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_000946_100 Hb_000946_100 Hb_006573_290--Hb_000946_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
640.556 470.895 986.68 2986.58 323.275 278.615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2085.1 1397.55 1367.25 677.12 924.308

CAGE analysis