Hb_111985_120

Information

Type -
Description -
Location Contig111985: 75936-78128
Sequence    

Annotation

kegg
ID tcc:TCM_034078
description Dihydroflavonol-4-reductase
nr
ID AGJ70142.1
description dihydroflavonol-4-reductase [Vitis rotundifolia]
swissprot
ID P51104
description Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1
trembl
ID M9UVP2
description Dihydroflavonol-4-reductase OS=Vitis rotundifolia PE=2 SV=1
Gene Ontology
ID GO:0016491
description dihydroflavonol 4-reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03620: 76009-78057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_120 0.0 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
2 Hb_001789_010 0.0608804501 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
3 Hb_001377_480 0.0834970937 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
4 Hb_111693_010 0.1100320691 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
5 Hb_000220_170 0.1163959622 - - -
6 Hb_111985_160 0.1171833763 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
7 Hb_001101_020 0.1177234759 - - hypothetical protein RCOM_0615680 [Ricinus communis]
8 Hb_187211_010 0.1228210444 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
9 Hb_002003_030 0.1236278567 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
10 Hb_004055_080 0.1287753149 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000029_420 0.1311802932 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
12 Hb_002553_100 0.1337667384 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
13 Hb_116469_010 0.142690085 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
14 Hb_005653_100 0.1457828085 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
15 Hb_142522_030 0.1546732215 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
16 Hb_002081_220 0.157367336 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
17 Hb_009778_050 0.1598579708 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
18 Hb_000101_370 0.1645187661 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
19 Hb_000625_130 0.1661491443 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
20 Hb_150730_010 0.1681037235 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_111985_120 Hb_111985_120 Hb_001789_010 Hb_001789_010 Hb_111985_120--Hb_001789_010 Hb_001377_480 Hb_001377_480 Hb_111985_120--Hb_001377_480 Hb_111693_010 Hb_111693_010 Hb_111985_120--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_111985_120--Hb_000220_170 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_001101_020 Hb_001101_020 Hb_111985_120--Hb_001101_020 Hb_001789_010--Hb_111693_010 Hb_001789_010--Hb_001377_480 Hb_001789_010--Hb_000220_170 Hb_187211_010 Hb_187211_010 Hb_001789_010--Hb_187211_010 Hb_002553_100 Hb_002553_100 Hb_001789_010--Hb_002553_100 Hb_001377_480--Hb_187211_010 Hb_000625_130 Hb_000625_130 Hb_001377_480--Hb_000625_130 Hb_001377_480--Hb_001101_020 Hb_142522_030 Hb_142522_030 Hb_001377_480--Hb_142522_030 Hb_004055_080 Hb_004055_080 Hb_111693_010--Hb_004055_080 Hb_111693_010--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_111693_010--Hb_058526_010 Hb_005653_100 Hb_005653_100 Hb_111693_010--Hb_005653_100 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420 Hb_000220_170--Hb_004055_080 Hb_000220_170--Hb_002553_100 Hb_000220_170--Hb_058526_010 Hb_111985_160--Hb_000029_420 Hb_111985_160--Hb_111693_010 Hb_111985_160--Hb_004055_080 Hb_111985_160--Hb_000220_170 Hb_000815_280 Hb_000815_280 Hb_111985_160--Hb_000815_280 Hb_001101_020--Hb_142522_030 Hb_001101_020--Hb_001789_010 Hb_001101_020--Hb_187211_010 Hb_129204_050 Hb_129204_050 Hb_001101_020--Hb_129204_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0732921 37.9313 139.035 34.6257 0.155714 0.0548001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167458 0.0987918 0.122353 261.614 2.24566

CAGE analysis