Hb_111985_160

Information

Type -
Description -
Location Contig111985: 105746-107720
Sequence    

Annotation

kegg
ID rcu:RCOM_1595070
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID KJB63629.1
description hypothetical protein B456_010G008900 [Gossypium raimondii]
swissprot
ID Q9XES5
description Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1
trembl
ID A0A0D2U3X8
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G008900 PE=4 SV=1
Gene Ontology
ID GO:0016491
description dihydroflavonol 4-reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03621: 105650-107470
cDNA
(Sanger)
(ID:Location)		 001_P16.ab1: 105650-106876

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_160 0.0 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
2 Hb_000029_420 0.0869429071 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
3 Hb_111693_010 0.1099256182 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
4 Hb_004055_080 0.1118558431 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_111985_120 0.1171833763 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
6 Hb_000220_170 0.12026831 - - -
7 Hb_000815_280 0.130301882 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
8 Hb_001377_480 0.1351467108 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
9 Hb_116469_010 0.1351801543 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
10 Hb_009778_050 0.1384770122 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
11 Hb_000589_100 0.1390085257 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000194_080 0.1395935341 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
13 Hb_131864_020 0.1397104878 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
14 Hb_000288_140 0.1414508641 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
15 Hb_150730_010 0.141983661 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
16 Hb_001723_070 0.1430287706 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
17 Hb_001473_100 0.1440781488 - - chalcone synthase 1 [Jatropha curcas]
18 Hb_005653_100 0.1455117121 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
19 Hb_002003_030 0.1460601117 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
20 Hb_003064_010 0.1469045357 - - Senescence-related gene 1 [Theobroma cacao]

Gene co-expression network

sample Hb_111985_160 Hb_111985_160 Hb_000029_420 Hb_000029_420 Hb_111985_160--Hb_000029_420 Hb_111693_010 Hb_111693_010 Hb_111985_160--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_111985_160--Hb_004055_080 Hb_111985_120 Hb_111985_120 Hb_111985_160--Hb_111985_120 Hb_000220_170 Hb_000220_170 Hb_111985_160--Hb_000220_170 Hb_000815_280 Hb_000815_280 Hb_111985_160--Hb_000815_280 Hb_000194_080 Hb_000194_080 Hb_000029_420--Hb_000194_080 Hb_003064_010 Hb_003064_010 Hb_000029_420--Hb_003064_010 Hb_000029_420--Hb_004055_080 Hb_000029_420--Hb_111693_010 Hb_001377_480 Hb_001377_480 Hb_000029_420--Hb_001377_480 Hb_111693_010--Hb_004055_080 Hb_111693_010--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_111693_010--Hb_058526_010 Hb_005653_100 Hb_005653_100 Hb_111693_010--Hb_005653_100 Hb_001789_010 Hb_001789_010 Hb_111693_010--Hb_001789_010 Hb_004055_080--Hb_000220_170 Hb_004055_080--Hb_058526_010 Hb_001473_100 Hb_001473_100 Hb_004055_080--Hb_001473_100 Hb_004055_080--Hb_005653_100 Hb_111985_120--Hb_001789_010 Hb_111985_120--Hb_001377_480 Hb_111985_120--Hb_111693_010 Hb_111985_120--Hb_000220_170 Hb_001101_020 Hb_001101_020 Hb_111985_120--Hb_001101_020 Hb_002553_100 Hb_002553_100 Hb_000220_170--Hb_002553_100 Hb_000220_170--Hb_001789_010 Hb_000220_170--Hb_058526_010 Hb_131864_020 Hb_131864_020 Hb_000815_280--Hb_131864_020 Hb_000625_130 Hb_000625_130 Hb_000815_280--Hb_000625_130 Hb_025469_040 Hb_025469_040 Hb_000815_280--Hb_025469_040 Hb_000815_280--Hb_000029_420 Hb_000815_280--Hb_000194_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13681 24.6995 48.0055 26.4732 0.14774 0.382677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.821695 0.421569 0.735712 134.064 1.93018

CAGE analysis