Hb_112023_010

Information

Type -
Description -
Location Contig112023: 2-543
Sequence    

Annotation

kegg
ID egr:104440343
description proline-rich receptor-like protein kinase PERK1
nr
ID KCW82430.1
description hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID A0A059CWX7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03826 PE=3 SV=1
Gene Ontology
ID GO:0005886
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112023_010 0.0 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
2 Hb_089497_010 0.135975016 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
3 Hb_001514_130 0.1477908866 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
4 Hb_004586_280 0.1565204341 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
5 Hb_111198_020 0.1615223724 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
6 Hb_000227_060 0.1618336961 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
7 Hb_000200_280 0.1622972268 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
8 Hb_011861_120 0.163193882 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
9 Hb_000640_130 0.1674975669 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
10 Hb_000087_050 0.1702205715 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
11 Hb_001828_020 0.1717613206 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
12 Hb_008790_020 0.1735693765 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
13 Hb_000036_050 0.1745470114 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
14 Hb_049436_010 0.1760563165 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
15 Hb_002827_020 0.1766545627 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
16 Hb_001104_240 0.1771226171 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_004136_040 0.1771763739 - - putative protein kinase [Arabidopsis thaliana]
18 Hb_000441_150 0.1771845173 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_011512_090 0.1797719392 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
20 Hb_000283_150 0.1802179546 - - Ankyrin repeat family protein [Theobroma cacao]

Gene co-expression network

sample Hb_112023_010 Hb_112023_010 Hb_089497_010 Hb_089497_010 Hb_112023_010--Hb_089497_010 Hb_001514_130 Hb_001514_130 Hb_112023_010--Hb_001514_130 Hb_004586_280 Hb_004586_280 Hb_112023_010--Hb_004586_280 Hb_111198_020 Hb_111198_020 Hb_112023_010--Hb_111198_020 Hb_000227_060 Hb_000227_060 Hb_112023_010--Hb_000227_060 Hb_000200_280 Hb_000200_280 Hb_112023_010--Hb_000200_280 Hb_089497_010--Hb_111198_020 Hb_002400_400 Hb_002400_400 Hb_089497_010--Hb_002400_400 Hb_004136_040 Hb_004136_040 Hb_089497_010--Hb_004136_040 Hb_166236_010 Hb_166236_010 Hb_089497_010--Hb_166236_010 Hb_004355_030 Hb_004355_030 Hb_089497_010--Hb_004355_030 Hb_001514_130--Hb_000200_280 Hb_001514_130--Hb_000227_060 Hb_001575_010 Hb_001575_010 Hb_001514_130--Hb_001575_010 Hb_005214_090 Hb_005214_090 Hb_001514_130--Hb_005214_090 Hb_004218_030 Hb_004218_030 Hb_001514_130--Hb_004218_030 Hb_000684_290 Hb_000684_290 Hb_001514_130--Hb_000684_290 Hb_167234_010 Hb_167234_010 Hb_004586_280--Hb_167234_010 Hb_004994_090 Hb_004994_090 Hb_004586_280--Hb_004994_090 Hb_001235_140 Hb_001235_140 Hb_004586_280--Hb_001235_140 Hb_162150_010 Hb_162150_010 Hb_004586_280--Hb_162150_010 Hb_000213_120 Hb_000213_120 Hb_004586_280--Hb_000213_120 Hb_003097_170 Hb_003097_170 Hb_004586_280--Hb_003097_170 Hb_000748_080 Hb_000748_080 Hb_111198_020--Hb_000748_080 Hb_004108_140 Hb_004108_140 Hb_111198_020--Hb_004108_140 Hb_011512_090 Hb_011512_090 Hb_111198_020--Hb_011512_090 Hb_111198_020--Hb_002400_400 Hb_001089_020 Hb_001089_020 Hb_111198_020--Hb_001089_020 Hb_000905_170 Hb_000905_170 Hb_000227_060--Hb_000905_170 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10626 7.49379 1.46748 2.38307 3.68338 3.93484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87024 2.49243 0.412949 10.4207 1.59192

CAGE analysis