Hb_112082_030

Information

Type -
Description -
Location Contig112082: 23339-25312
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22290g
description POPTRDRAFT_561446; alcohol dehydroge family protein
nr
ID XP_012074292.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067KUZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08739 PE=3 SV=1
Gene Ontology
ID GO:0047044
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03646: 23722-25332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112082_030 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_001357_260 0.0748546163 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_000189_260 0.1095010808 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002917_010 0.1137679084 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
5 Hb_008406_010 0.1151324354 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
6 Hb_005511_050 0.1157396354 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
7 Hb_002890_400 0.1202952213 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
8 Hb_003538_020 0.1210939819 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
9 Hb_000976_020 0.1240343681 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_006478_180 0.1255083343 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
11 Hb_132880_030 0.1262360827 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
12 Hb_002758_040 0.1314289171 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_006452_050 0.1329146319 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
14 Hb_002965_020 0.1335936185 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
15 Hb_016172_010 0.1362449934 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
16 Hb_039342_030 0.1398473751 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002234_150 0.1398808737 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
18 Hb_000245_140 0.1401064801 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
19 Hb_064398_010 0.1402520143 - - cytochrome P450, putative [Ricinus communis]
20 Hb_020332_040 0.1403805765 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_112082_030 Hb_112082_030 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_005511_050 Hb_005511_050 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_001357_260--Hb_002917_010 Hb_000976_020 Hb_000976_020 Hb_001357_260--Hb_000976_020 Hb_002965_020 Hb_002965_020 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300 Hb_020332_040 Hb_020332_040 Hb_000189_260--Hb_020332_040 Hb_000189_260--Hb_002917_010 Hb_000189_260--Hb_000976_020 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010 Hb_002917_010--Hb_000976_020 Hb_002917_010--Hb_002965_020 Hb_146023_010 Hb_146023_010 Hb_002917_010--Hb_146023_010 Hb_064398_010 Hb_064398_010 Hb_002917_010--Hb_064398_010 Hb_008225_080 Hb_008225_080 Hb_008406_010--Hb_008225_080 Hb_002232_370 Hb_002232_370 Hb_008406_010--Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_008406_010--Hb_000245_140 Hb_000758_030 Hb_000758_030 Hb_008406_010--Hb_000758_030 Hb_008406_010--Hb_001357_260 Hb_132880_030 Hb_132880_030 Hb_005511_050--Hb_132880_030 Hb_000160_230 Hb_000160_230 Hb_005511_050--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_005511_050--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_005511_050--Hb_039342_030 Hb_001999_220 Hb_001999_220 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_010931_010 Hb_010931_010 Hb_002890_400--Hb_010931_010 Hb_002890_400--Hb_001357_260 Hb_002890_400--Hb_000189_260 Hb_009012_020 Hb_009012_020 Hb_002890_400--Hb_009012_020 Hb_000411_060 Hb_000411_060 Hb_002890_400--Hb_000411_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.56688 2.04777 1.43167 0.0452866 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310239 1.42332 0 60.1895 1.08025

CAGE analysis