Hb_112198_010

Information

Type -
Description -
Location Contig112198: 796-2139
Sequence    

Annotation

kegg
ID rcu:RCOM_1382940
description hypothetical protein
nr
ID XP_012093177.1
description PREDICTED: F-box protein SKIP22 [Jatropha curcas]
swissprot
ID Q9ZUB8
description F-box protein SKIP22 OS=Arabidopsis thaliana GN=SKIP22 PE=1 SV=1
trembl
ID A0A067LJS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112198_010 0.0 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
2 Hb_004435_030 0.0458169641 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
3 Hb_003906_200 0.0561941577 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
4 Hb_000917_230 0.0686160106 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
5 Hb_004030_080 0.0735315231 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
6 Hb_000868_090 0.0745839058 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
7 Hb_005582_040 0.0777558884 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
8 Hb_002234_090 0.0783909324 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
9 Hb_006452_120 0.0793973891 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_001635_120 0.0809812908 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_005396_150 0.0814592379 - - protein binding protein, putative [Ricinus communis]
12 Hb_001205_240 0.0816435249 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
13 Hb_000029_060 0.0819776783 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
14 Hb_008948_020 0.0820035222 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
15 Hb_000984_170 0.0822285292 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_007747_080 0.0824190453 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000347_400 0.0827551176 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
18 Hb_002830_010 0.0829332781 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
19 Hb_000487_270 0.0834007142 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
20 Hb_000574_450 0.0840285189 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_112198_010 Hb_112198_010 Hb_004435_030 Hb_004435_030 Hb_112198_010--Hb_004435_030 Hb_003906_200 Hb_003906_200 Hb_112198_010--Hb_003906_200 Hb_000917_230 Hb_000917_230 Hb_112198_010--Hb_000917_230 Hb_004030_080 Hb_004030_080 Hb_112198_010--Hb_004030_080 Hb_000868_090 Hb_000868_090 Hb_112198_010--Hb_000868_090 Hb_005582_040 Hb_005582_040 Hb_112198_010--Hb_005582_040 Hb_001716_040 Hb_001716_040 Hb_004435_030--Hb_001716_040 Hb_008948_020 Hb_008948_020 Hb_004435_030--Hb_008948_020 Hb_000640_040 Hb_000640_040 Hb_004435_030--Hb_000640_040 Hb_004435_030--Hb_005582_040 Hb_001635_120 Hb_001635_120 Hb_004435_030--Hb_001635_120 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_002830_010 Hb_002830_010 Hb_004030_080--Hb_002830_010 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_004030_080--Hb_005582_040 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_007765_110 Hb_007765_110 Hb_000868_090--Hb_007765_110 Hb_019863_070 Hb_019863_070 Hb_000868_090--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_000868_090--Hb_002818_030 Hb_003464_090 Hb_003464_090 Hb_000868_090--Hb_003464_090 Hb_000318_250 Hb_000318_250 Hb_000868_090--Hb_000318_250 Hb_000868_090--Hb_003906_200 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_005582_040--Hb_000640_040 Hb_005582_040--Hb_001716_040 Hb_005582_040--Hb_001635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7552 11.4708 6.13417 10.3762 3.83513 6.94239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.83507 7.31714 7.87778 8.75974 9.17642

CAGE analysis