Hb_112399_010

Information

Type -
Description -
Location Contig112399: 8-581
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112399_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_005298_010 0.1377182636 - - -
3 Hb_055384_010 0.14972257 - - -
4 Hb_000056_100 0.1665196033 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
5 Hb_001184_110 0.1674374351 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
6 Hb_000853_110 0.1682486769 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
7 Hb_005625_060 0.1709254016 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
8 Hb_000920_270 0.1744862726 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
9 Hb_005839_120 0.1758437642 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_000500_040 0.1800659762 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003861_080 0.1819841043 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
12 Hb_003462_030 0.1836062794 - - hypothetical protein UMN_5210_01, partial [Pinus radiata]
13 Hb_004586_190 0.1841493942 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
14 Hb_001117_100 0.1868251923 - - 40S ribosomal protein S16A [Hevea brasiliensis]
15 Hb_003638_030 0.1875816574 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
16 Hb_005625_040 0.1881966322 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_008103_120 0.189103928 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
18 Hb_011909_040 0.1913673928 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
19 Hb_000123_110 0.192565991 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
20 Hb_002849_210 0.1928891866 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_112399_010 Hb_112399_010 Hb_005298_010 Hb_005298_010 Hb_112399_010--Hb_005298_010 Hb_055384_010 Hb_055384_010 Hb_112399_010--Hb_055384_010 Hb_000056_100 Hb_000056_100 Hb_112399_010--Hb_000056_100 Hb_001184_110 Hb_001184_110 Hb_112399_010--Hb_001184_110 Hb_000853_110 Hb_000853_110 Hb_112399_010--Hb_000853_110 Hb_005625_060 Hb_005625_060 Hb_112399_010--Hb_005625_060 Hb_005298_010--Hb_005625_060 Hb_096225_020 Hb_096225_020 Hb_005298_010--Hb_096225_020 Hb_005298_010--Hb_001184_110 Hb_000436_010 Hb_000436_010 Hb_005298_010--Hb_000436_010 Hb_169246_010 Hb_169246_010 Hb_005298_010--Hb_169246_010 Hb_002435_110 Hb_002435_110 Hb_055384_010--Hb_002435_110 Hb_008103_120 Hb_008103_120 Hb_055384_010--Hb_008103_120 Hb_120155_010 Hb_120155_010 Hb_055384_010--Hb_120155_010 Hb_002025_310 Hb_002025_310 Hb_055384_010--Hb_002025_310 Hb_003073_210 Hb_003073_210 Hb_055384_010--Hb_003073_210 Hb_010863_080 Hb_010863_080 Hb_000056_100--Hb_010863_080 Hb_000500_040 Hb_000500_040 Hb_000056_100--Hb_000500_040 Hb_000124_020 Hb_000124_020 Hb_000056_100--Hb_000124_020 Hb_002890_280 Hb_002890_280 Hb_000056_100--Hb_002890_280 Hb_000856_340 Hb_000856_340 Hb_000056_100--Hb_000856_340 Hb_003861_080 Hb_003861_080 Hb_000056_100--Hb_003861_080 Hb_007101_130 Hb_007101_130 Hb_001184_110--Hb_007101_130 Hb_006846_110 Hb_006846_110 Hb_001184_110--Hb_006846_110 Hb_008453_090 Hb_008453_090 Hb_001184_110--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_001184_110--Hb_000671_150 Hb_000935_050 Hb_000935_050 Hb_001184_110--Hb_000935_050 Hb_007672_010 Hb_007672_010 Hb_001184_110--Hb_007672_010 Hb_015001_020 Hb_015001_020 Hb_000853_110--Hb_015001_020 Hb_000032_570 Hb_000032_570 Hb_000853_110--Hb_000032_570 Hb_002762_060 Hb_002762_060 Hb_000853_110--Hb_002762_060 Hb_002272_250 Hb_002272_250 Hb_000853_110--Hb_002272_250 Hb_001030_120 Hb_001030_120 Hb_000853_110--Hb_001030_120 Hb_007426_230 Hb_007426_230 Hb_000853_110--Hb_007426_230 Hb_005625_060--Hb_000853_110 Hb_005625_060--Hb_001184_110 Hb_005625_060--Hb_007101_130 Hb_005625_060--Hb_015001_020 Hb_000123_260 Hb_000123_260 Hb_005625_060--Hb_000123_260 Hb_027472_180 Hb_027472_180 Hb_005625_060--Hb_027472_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.495416 0.241851 0.123422 0 0.34202 0.425179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.235172 0.461964 0.477014 0.305154 0

CAGE analysis