Hb_112791_030

Information

Type -
Description -
Location Contig112791: 26176-28192
Sequence    

Annotation

kegg
ID cam:101502180
description uncharacterized LOC101502180
nr
ID XP_007023768.1
description Uncharacterized protein TCM_027940 [Theobroma cacao]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061G943
description Uncharacterized protein OS=Theobroma cacao GN=TCM_027940 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112791_030 0.0 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
2 Hb_145080_010 0.0077949739 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
3 Hb_011358_010 0.0365669558 - - -
4 Hb_011432_010 0.0882365377 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
5 Hb_037519_010 0.0964537246 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
6 Hb_002973_130 0.1148714752 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
7 Hb_007295_020 0.1172815313 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
8 Hb_007590_030 0.1305519345 - - PREDICTED: iridoid synthase [Jatropha curcas]
9 Hb_000193_090 0.1309687811 - - cysteine protease, putative [Ricinus communis]
10 Hb_125181_010 0.1347344891 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
11 Hb_002447_100 0.1348437493 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
12 Hb_002876_280 0.13805612 - - hypothetical protein RCOM_0686540 [Ricinus communis]
13 Hb_006351_120 0.1391755263 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
14 Hb_016564_050 0.1485850113 - - -
15 Hb_001277_380 0.1486082404 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
16 Hb_000207_240 0.1588790787 - - hypothetical protein RCOM_0686540 [Ricinus communis]
17 Hb_000856_210 0.1638831442 - - nitrate transporter, putative [Ricinus communis]
18 Hb_001355_060 0.1644187576 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_016734_040 0.1660315625 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_001221_250 0.1726911916 - - -

Gene co-expression network

sample Hb_112791_030 Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_112791_030--Hb_145080_010 Hb_011358_010 Hb_011358_010 Hb_112791_030--Hb_011358_010 Hb_011432_010 Hb_011432_010 Hb_112791_030--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_112791_030--Hb_037519_010 Hb_002973_130 Hb_002973_130 Hb_112791_030--Hb_002973_130 Hb_007295_020 Hb_007295_020 Hb_112791_030--Hb_007295_020 Hb_145080_010--Hb_011358_010 Hb_145080_010--Hb_011432_010 Hb_145080_010--Hb_037519_010 Hb_145080_010--Hb_007295_020 Hb_145080_010--Hb_002973_130 Hb_011358_010--Hb_037519_010 Hb_011358_010--Hb_011432_010 Hb_011358_010--Hb_002973_130 Hb_000193_090 Hb_000193_090 Hb_011358_010--Hb_000193_090 Hb_011432_010--Hb_002973_130 Hb_011432_010--Hb_037519_010 Hb_002876_280 Hb_002876_280 Hb_011432_010--Hb_002876_280 Hb_037519_010--Hb_002973_130 Hb_037519_010--Hb_002876_280 Hb_002973_130--Hb_002876_280 Hb_016564_050 Hb_016564_050 Hb_007295_020--Hb_016564_050 Hb_001277_380 Hb_001277_380 Hb_007295_020--Hb_001277_380 Hb_125181_010 Hb_125181_010 Hb_007295_020--Hb_125181_010 Hb_094437_030 Hb_094437_030 Hb_007295_020--Hb_094437_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0109596 0 0.0171387 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00786522 0.041616

CAGE analysis