Hb_112798_030

Information

Type -
Description -
Location Contig112798: 16719-19405
Sequence    

Annotation

kegg
ID rcu:RCOM_0482930
description hypothetical protein
nr
ID XP_002527373.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L8Q8
description Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1
trembl
ID B9SN04
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0482930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03865: 17233-17553 , PASA_asmbl_03866: 17861-18615 , PASA_asmbl_03867: 18863-21697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112798_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011571_010 0.0691069998 - - Metal tolerance protein C4, putative [Ricinus communis]
3 Hb_153112_020 0.0777371129 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
4 Hb_000331_080 0.0784832889 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
5 Hb_004931_090 0.0788640012 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
6 Hb_008878_030 0.0810707763 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
7 Hb_011224_110 0.082383115 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
8 Hb_000270_270 0.0835811404 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
9 Hb_002968_060 0.0845491093 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
10 Hb_006541_030 0.0863934664 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
11 Hb_004324_070 0.0864890527 - - protein phosphatase 2C [Hevea brasiliensis]
12 Hb_003020_020 0.0873016931 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
13 Hb_004657_050 0.0873471908 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
14 Hb_004048_110 0.0874651121 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
15 Hb_011316_040 0.0880298289 - - peptidase, putative [Ricinus communis]
16 Hb_010661_030 0.0886740529 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
17 Hb_005539_350 0.0888941 - - conserved hypothetical protein [Ricinus communis]
18 Hb_017904_010 0.08892977 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
19 Hb_001821_010 0.0897217241 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
20 Hb_000787_050 0.0898556651 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_112798_030 Hb_112798_030 Hb_011571_010 Hb_011571_010 Hb_112798_030--Hb_011571_010 Hb_153112_020 Hb_153112_020 Hb_112798_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_112798_030--Hb_000331_080 Hb_004931_090 Hb_004931_090 Hb_112798_030--Hb_004931_090 Hb_008878_030 Hb_008878_030 Hb_112798_030--Hb_008878_030 Hb_011224_110 Hb_011224_110 Hb_112798_030--Hb_011224_110 Hb_007317_210 Hb_007317_210 Hb_011571_010--Hb_007317_210 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_000331_080--Hb_004994_100 Hb_000331_080--Hb_008878_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_011224_110--Hb_004657_050 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.3369 8.71579 18.1278 11.5256 25.933 25.7589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6955 42.177 37.2818 12.3876 14.1404

CAGE analysis