Hb_112950_010

Information

Type -
Description -
Location Contig112950: 48-584
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP42480.1
description hypothetical protein JCGZ_00277 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112950_010 0.0 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
2 Hb_003598_050 0.0532242738 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_000083_200 0.0664465564 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002686_220 0.0668060721 - - PREDICTED: expansin-A15-like [Jatropha curcas]
5 Hb_001500_020 0.0674956962 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001349_040 0.0685689461 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
7 Hb_180088_010 0.0703942705 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_006573_120 0.0706912033 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
9 Hb_009079_020 0.0723263651 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
10 Hb_006351_050 0.0752704312 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
11 Hb_001818_010 0.0755051994 - - Disease resistance response protein, putative [Ricinus communis]
12 Hb_006153_140 0.0782335122 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
13 Hb_002260_140 0.0784103069 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009158_010 0.0877267875 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
15 Hb_135757_030 0.0883247098 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
16 Hb_009421_060 0.0887954194 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
17 Hb_051212_020 0.0919208021 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
18 Hb_000497_080 0.0920859326 - - conserved hypothetical protein [Ricinus communis]
19 Hb_118934_010 0.0923723961 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
20 Hb_000155_030 0.0925917119 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]

Gene co-expression network

sample Hb_112950_010 Hb_112950_010 Hb_003598_050 Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_002686_220 Hb_002686_220 Hb_112950_010--Hb_002686_220 Hb_001500_020 Hb_001500_020 Hb_112950_010--Hb_001500_020 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_000497_080 Hb_000497_080 Hb_003598_050--Hb_000497_080 Hb_003598_050--Hb_002686_220 Hb_003598_050--Hb_180088_010 Hb_000083_200--Hb_001349_040 Hb_009421_060 Hb_009421_060 Hb_000083_200--Hb_009421_060 Hb_000497_030 Hb_000497_030 Hb_000083_200--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_000083_200--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_000083_200--Hb_000699_220 Hb_006153_140 Hb_006153_140 Hb_002686_220--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_002686_220--Hb_009079_020 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_015175_070 Hb_015175_070 Hb_002686_220--Hb_015175_070 Hb_001500_020--Hb_006351_050 Hb_001500_020--Hb_180088_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_001349_040--Hb_000699_220 Hb_001349_040--Hb_000497_030 Hb_001349_040--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_001349_040--Hb_000310_050 Hb_180088_010--Hb_006351_050 Hb_007919_010 Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_009421_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.736831 1.73855 11.2488 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0776956 1.78402

CAGE analysis