Hb_113084_010

Information

Type -
Description -
Location Contig113084: 340-840
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10340g
description POPTRDRAFT_804271; hypothetical protein
nr
ID XP_012078965.1
description PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9HS19
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10340g PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03896: 369-822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113084_010 0.0 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
2 Hb_000122_120 0.2636455331 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
3 Hb_000668_090 0.2647670836 - - senescence-associated family protein [Populus trichocarpa]
4 Hb_033546_020 0.2712209159 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
5 Hb_000035_280 0.2747683546 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
6 Hb_001001_050 0.2828169492 - - CXE protein [Hevea brasiliensis]
7 Hb_003098_010 0.2876098937 - - -
8 Hb_000016_050 0.2953995424 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
9 Hb_000074_100 0.297007667 - - conserved hypothetical protein [Ricinus communis]
10 Hb_145655_010 0.2996623665 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_022174_010 0.2997927983 - - elicitor-responsive protein [Hevea brasiliensis]
12 Hb_058620_060 0.3038028332 - - uncharacterized protein LOC105646159 precursor [Jatropha curcas]
13 Hb_004064_030 0.3055243773 - - aldose-1-epimerase, putative [Ricinus communis]
14 Hb_002903_100 0.3083838388 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
15 Hb_000964_100 0.3092333569 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
16 Hb_001377_280 0.3152340225 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
17 Hb_000370_070 0.3164067693 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
18 Hb_000258_150 0.3199611178 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
19 Hb_001449_060 0.3250902065 - - kelch repeat protein, putative [Ricinus communis]
20 Hb_000739_200 0.3251155462 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]

Gene co-expression network

sample Hb_113084_010 Hb_113084_010 Hb_000122_120 Hb_000122_120 Hb_113084_010--Hb_000122_120 Hb_000668_090 Hb_000668_090 Hb_113084_010--Hb_000668_090 Hb_033546_020 Hb_033546_020 Hb_113084_010--Hb_033546_020 Hb_000035_280 Hb_000035_280 Hb_113084_010--Hb_000035_280 Hb_001001_050 Hb_001001_050 Hb_113084_010--Hb_001001_050 Hb_003098_010 Hb_003098_010 Hb_113084_010--Hb_003098_010 Hb_010175_010 Hb_010175_010 Hb_000122_120--Hb_010175_010 Hb_006154_020 Hb_006154_020 Hb_000122_120--Hb_006154_020 Hb_000122_120--Hb_000668_090 Hb_058620_060 Hb_058620_060 Hb_000122_120--Hb_058620_060 Hb_019516_090 Hb_019516_090 Hb_000122_120--Hb_019516_090 Hb_001776_030 Hb_001776_030 Hb_000668_090--Hb_001776_030 Hb_003964_020 Hb_003964_020 Hb_000668_090--Hb_003964_020 Hb_000074_100 Hb_000074_100 Hb_000668_090--Hb_000074_100 Hb_000668_090--Hb_001001_050 Hb_004619_070 Hb_004619_070 Hb_000668_090--Hb_004619_070 Hb_004064_030 Hb_004064_030 Hb_000668_090--Hb_004064_030 Hb_001377_300 Hb_001377_300 Hb_033546_020--Hb_001377_300 Hb_001998_170 Hb_001998_170 Hb_033546_020--Hb_001998_170 Hb_003906_020 Hb_003906_020 Hb_033546_020--Hb_003906_020 Hb_007889_020 Hb_007889_020 Hb_033546_020--Hb_007889_020 Hb_000311_040 Hb_000311_040 Hb_033546_020--Hb_000311_040 Hb_000035_280--Hb_003098_010 Hb_118228_010 Hb_118228_010 Hb_000035_280--Hb_118228_010 Hb_000045_280 Hb_000045_280 Hb_000035_280--Hb_000045_280 Hb_002893_120 Hb_002893_120 Hb_000035_280--Hb_002893_120 Hb_004785_050 Hb_004785_050 Hb_000035_280--Hb_004785_050 Hb_000424_080 Hb_000424_080 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004449_230 Hb_004449_230 Hb_001001_050--Hb_004449_230 Hb_001001_050--Hb_004064_030 Hb_000964_100 Hb_000964_100 Hb_001001_050--Hb_000964_100 Hb_001449_060 Hb_001449_060 Hb_003098_010--Hb_001449_060 Hb_000242_020 Hb_000242_020 Hb_003098_010--Hb_000242_020 Hb_000311_030 Hb_000311_030 Hb_003098_010--Hb_000311_030 Hb_006642_030 Hb_006642_030 Hb_003098_010--Hb_006642_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16527 0.688299 1.43389 8.28243 0.0537544 0.475446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668868 1.57642 0.356229 0.0873625 1.37591

CAGE analysis