Hb_113119_010

Information

Type -
Description -
Location Contig113119: 211-1014
Sequence    

Annotation

kegg
ID rcu:RCOM_0037660
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002534281.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8L899
description Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1
trembl
ID B9T7R2
description Serine-threonine protein kinase, plant-type, putative (Fragment) OS=Ricinus communis GN=RCOM_0037660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113119_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_021854_010 0.1103155429 - - -
3 Hb_000120_740 0.1515471283 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
4 Hb_001894_010 0.1535110989 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
5 Hb_000042_380 0.1538065571 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
6 Hb_021854_020 0.1545620953 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
7 Hb_005588_100 0.1558000696 - - protein phosphatase, putative [Ricinus communis]
8 Hb_000590_070 0.1585925212 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
9 Hb_000473_030 0.1612029855 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
10 Hb_001360_030 0.1632656127 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
11 Hb_008066_080 0.1666529032 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
12 Hb_005485_070 0.1675936115 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
13 Hb_001277_400 0.1682316194 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
14 Hb_005181_060 0.1719821498 - - ATP-citrate synthase, putative [Ricinus communis]
15 Hb_001365_010 0.1723770598 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
16 Hb_001310_050 0.1743683037 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
17 Hb_009193_010 0.1772551902 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
18 Hb_000997_290 0.1781214494 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
19 Hb_012033_010 0.1783946286 - - PREDICTED: histone H1.2-like [Jatropha curcas]
20 Hb_008695_150 0.1786678085 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_113119_010 Hb_113119_010 Hb_021854_010 Hb_021854_010 Hb_113119_010--Hb_021854_010 Hb_000120_740 Hb_000120_740 Hb_113119_010--Hb_000120_740 Hb_001894_010 Hb_001894_010 Hb_113119_010--Hb_001894_010 Hb_000042_380 Hb_000042_380 Hb_113119_010--Hb_000042_380 Hb_021854_020 Hb_021854_020 Hb_113119_010--Hb_021854_020 Hb_005588_100 Hb_005588_100 Hb_113119_010--Hb_005588_100 Hb_021854_010--Hb_021854_020 Hb_001310_050 Hb_001310_050 Hb_021854_010--Hb_001310_050 Hb_001365_010 Hb_001365_010 Hb_021854_010--Hb_001365_010 Hb_021854_010--Hb_001894_010 Hb_005181_060 Hb_005181_060 Hb_021854_010--Hb_005181_060 Hb_036388_010 Hb_036388_010 Hb_000120_740--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_000120_740--Hb_004326_010 Hb_001105_130 Hb_001105_130 Hb_000120_740--Hb_001105_130 Hb_035834_010 Hb_035834_010 Hb_000120_740--Hb_035834_010 Hb_000590_070 Hb_000590_070 Hb_000120_740--Hb_000590_070 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010 Hb_003092_050 Hb_003092_050 Hb_001894_010--Hb_003092_050 Hb_005485_070 Hb_005485_070 Hb_001894_010--Hb_005485_070 Hb_001894_010--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_001894_010--Hb_002527_060 Hb_001894_010--Hb_000120_740 Hb_001894_010--Hb_036388_010 Hb_008695_150 Hb_008695_150 Hb_000042_380--Hb_008695_150 Hb_005545_020 Hb_005545_020 Hb_000042_380--Hb_005545_020 Hb_007575_030 Hb_007575_030 Hb_000042_380--Hb_007575_030 Hb_001277_400 Hb_001277_400 Hb_000042_380--Hb_001277_400 Hb_005568_050 Hb_005568_050 Hb_000042_380--Hb_005568_050 Hb_004883_020 Hb_004883_020 Hb_000042_380--Hb_004883_020 Hb_021854_020--Hb_001310_050 Hb_010068_050 Hb_010068_050 Hb_021854_020--Hb_010068_050 Hb_006594_080 Hb_006594_080 Hb_021854_020--Hb_006594_080 Hb_008033_060 Hb_008033_060 Hb_021854_020--Hb_008033_060 Hb_007943_150 Hb_007943_150 Hb_005588_100--Hb_007943_150 Hb_000496_130 Hb_000496_130 Hb_005588_100--Hb_000496_130 Hb_001564_070 Hb_001564_070 Hb_005588_100--Hb_001564_070 Hb_002811_200 Hb_002811_200 Hb_005588_100--Hb_002811_200 Hb_001434_020 Hb_001434_020 Hb_005588_100--Hb_001434_020 Hb_000230_530 Hb_000230_530 Hb_005588_100--Hb_000230_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.613443 1.76146 5.8226 5.5024 0.700712 0.682703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0670416 0.10543 1.71719 7.424 7.41099

CAGE analysis