Hb_113203_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig113203: 3325-5558
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03953: 3994-4381 , PASA_asmbl_03954: 4782-5095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113203_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_134279_010 0.1645084842 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
3 Hb_000233_100 0.1776032788 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_000107_560 0.1785959865 - - glutamate receptor 3 plant, putative [Ricinus communis]
5 Hb_000105_030 0.1830963397 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
6 Hb_000679_210 0.1925814856 - - grr1, plant, putative [Ricinus communis]
7 Hb_000105_020 0.1937555327 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
8 Hb_053125_010 0.1959483596 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
9 Hb_008948_160 0.1971334065 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
10 Hb_003604_030 0.1978327693 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
11 Hb_014497_020 0.2028618736 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
12 Hb_003604_040 0.2042168771 - - Serine/threonine-protein kinase sepA [Morus notabilis]
13 Hb_003895_040 0.2098956477 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
14 Hb_001079_070 0.2131632546 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
15 Hb_000512_030 0.2149374595 - - wall-associated kinase, putative [Ricinus communis]
16 Hb_000789_240 0.2151232743 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
17 Hb_167977_010 0.2189990467 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
18 Hb_122273_020 0.2190554357 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
19 Hb_162280_010 0.2192206196 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
20 Hb_000345_330 0.2227333421 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_113203_010 Hb_113203_010 Hb_134279_010 Hb_134279_010 Hb_113203_010--Hb_134279_010 Hb_000233_100 Hb_000233_100 Hb_113203_010--Hb_000233_100 Hb_000107_560 Hb_000107_560 Hb_113203_010--Hb_000107_560 Hb_000105_030 Hb_000105_030 Hb_113203_010--Hb_000105_030 Hb_000679_210 Hb_000679_210 Hb_113203_010--Hb_000679_210 Hb_000105_020 Hb_000105_020 Hb_113203_010--Hb_000105_020 Hb_003895_040 Hb_003895_040 Hb_134279_010--Hb_003895_040 Hb_134279_010--Hb_000679_210 Hb_015183_080 Hb_015183_080 Hb_134279_010--Hb_015183_080 Hb_014497_020 Hb_014497_020 Hb_134279_010--Hb_014497_020 Hb_000512_030 Hb_000512_030 Hb_134279_010--Hb_000512_030 Hb_003604_030 Hb_003604_030 Hb_134279_010--Hb_003604_030 Hb_060909_010 Hb_060909_010 Hb_000233_100--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_002475_130 Hb_002475_130 Hb_000233_100--Hb_002475_130 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010 Hb_080451_010 Hb_080451_010 Hb_000107_560--Hb_080451_010 Hb_089100_040 Hb_089100_040 Hb_000107_560--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000107_560--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_000107_560--Hb_065500_030 Hb_009897_010 Hb_009897_010 Hb_000107_560--Hb_009897_010 Hb_000120_970 Hb_000120_970 Hb_000107_560--Hb_000120_970 Hb_000631_110 Hb_000631_110 Hb_000105_030--Hb_000631_110 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000175_120 Hb_000175_120 Hb_000105_030--Hb_000175_120 Hb_008948_160 Hb_008948_160 Hb_000105_030--Hb_008948_160 Hb_000571_160 Hb_000571_160 Hb_000679_210--Hb_000571_160 Hb_000679_210--Hb_000512_030 Hb_011861_080 Hb_011861_080 Hb_000679_210--Hb_011861_080 Hb_002631_200 Hb_002631_200 Hb_000679_210--Hb_002631_200 Hb_000789_240 Hb_000789_240 Hb_000679_210--Hb_000789_240 Hb_000105_020--Hb_008948_160 Hb_143986_010 Hb_143986_010 Hb_000105_020--Hb_143986_010 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_003604_040 Hb_003604_040 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.620195 4.82058 0.239877 1.71362 2.20866 2.17248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.687346 2.96722 2.5761

CAGE analysis