Hb_113216_010

Information

Type -
Description -
Location Contig113216: 456-1664
Sequence    

Annotation

kegg
ID rcu:RCOM_1497600
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012090330.1
description PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26165 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03956: 667-1550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113216_010 0.0 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
2 Hb_000212_280 0.063784581 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
3 Hb_000016_180 0.0689965997 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_002837_070 0.0776121726 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
5 Hb_000185_090 0.0776476594 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
6 Hb_025048_040 0.0835828423 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
7 Hb_174865_050 0.0845249849 - - PREDICTED: neuroguidin [Jatropha curcas]
8 Hb_000732_020 0.0846950762 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_001523_010 0.0863464088 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
10 Hb_012760_200 0.0877262471 - - protein phsophatase-2a, putative [Ricinus communis]
11 Hb_001582_030 0.0879518965 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
12 Hb_000466_060 0.0901046601 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_005000_270 0.0905455487 - - unnamed protein product [Vitis vinifera]
14 Hb_005028_010 0.0909719834 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
15 Hb_006173_020 0.0914595635 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
16 Hb_000573_040 0.0918426151 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
17 Hb_000320_440 0.0924739738 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
18 Hb_019871_020 0.092672749 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
19 Hb_002918_070 0.0937717617 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
20 Hb_000213_060 0.0943035415 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_113216_010 Hb_113216_010 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_000212_280--Hb_025048_040 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_000016_180--Hb_000185_090 Hb_000779_040 Hb_000779_040 Hb_000016_180--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000016_180--Hb_002918_070 Hb_000792_110 Hb_000792_110 Hb_000016_180--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_000016_180--Hb_000213_060 Hb_061256_030 Hb_061256_030 Hb_002837_070--Hb_061256_030 Hb_010189_010 Hb_010189_010 Hb_002837_070--Hb_010189_010 Hb_002837_070--Hb_174865_050 Hb_002837_070--Hb_000212_280 Hb_000211_090 Hb_000211_090 Hb_002837_070--Hb_000211_090 Hb_000185_090--Hb_000211_090 Hb_003666_050 Hb_003666_050 Hb_000185_090--Hb_003666_050 Hb_000185_090--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020 Hb_025048_040--Hb_000331_480 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_012760_200 Hb_012760_200 Hb_025048_040--Hb_012760_200 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050 Hb_174865_050--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_174865_050--Hb_000573_040 Hb_174865_050--Hb_003666_050 Hb_001195_030 Hb_001195_030 Hb_174865_050--Hb_001195_030 Hb_174865_050--Hb_000185_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
334.043 96.3047 18.9608 37.9823 369.482 483.018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.049 68.3772 91.9535 53.952 15.8643

CAGE analysis