Hb_113379_010

Information

Type -
Description -
Location Contig113379: 4465-8998
Sequence    

Annotation

kegg
ID rcu:RCOM_1752040
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012080785.1
description PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
swissprot
ID A5JTQ3
description Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1
trembl
ID A0A067KFX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16402 PE=4 SV=1
Gene Ontology
ID GO:0008422
description beta-xylosidase alpha-l-arabinofuranosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03984: 4640-8977 , PASA_asmbl_03985: 4721-8984
cDNA
(Sanger)
(ID:Location)		 034_E12.ab1: 4640-6493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113379_010 0.0 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
2 Hb_001384_040 0.0546110896 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
3 Hb_002740_060 0.0905607414 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
4 Hb_011618_010 0.0990381985 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
5 Hb_012539_080 0.0997805596 - - Polyprotein, putative [Solanum demissum]
6 Hb_005155_030 0.1008352074 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_114893_010 0.101603802 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_004096_200 0.1111799997 - - PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]
9 Hb_006053_020 0.1137313034 - - CAP [Theobroma cacao]
10 Hb_002001_030 0.1181797145 - - Plasma membrane ATPase 4 [Gossypium arboreum]
11 Hb_002122_070 0.118888297 - - unnamed protein product [Vitis vinifera]
12 Hb_000445_160 0.1191326268 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
13 Hb_002835_050 0.1202087038 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
14 Hb_008253_050 0.1208056602 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
15 Hb_119443_010 0.1252183431 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
16 Hb_041139_010 0.1257014375 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
17 Hb_010381_080 0.1278763006 - - cytochrome P450, putative [Ricinus communis]
18 Hb_004896_030 0.1284303928 - - hypothetical protein VITISV_007475 [Vitis vinifera]
19 Hb_176680_010 0.1285717817 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
20 Hb_000907_130 0.1286865789 - - -

Gene co-expression network

sample Hb_113379_010 Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_113379_010--Hb_001384_040 Hb_002740_060 Hb_002740_060 Hb_113379_010--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_113379_010--Hb_011618_010 Hb_012539_080 Hb_012539_080 Hb_113379_010--Hb_012539_080 Hb_005155_030 Hb_005155_030 Hb_113379_010--Hb_005155_030 Hb_114893_010 Hb_114893_010 Hb_113379_010--Hb_114893_010 Hb_001384_040--Hb_011618_010 Hb_001384_040--Hb_002740_060 Hb_008253_050 Hb_008253_050 Hb_001384_040--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001384_040--Hb_041139_010 Hb_002001_030 Hb_002001_030 Hb_001384_040--Hb_002001_030 Hb_004896_030 Hb_004896_030 Hb_002740_060--Hb_004896_030 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_005622_040 Hb_005622_040 Hb_002740_060--Hb_005622_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110 Hb_011618_010--Hb_041139_010 Hb_011618_010--Hb_008253_050 Hb_005348_050 Hb_005348_050 Hb_011618_010--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_011618_010--Hb_001894_100 Hb_000589_410 Hb_000589_410 Hb_011618_010--Hb_000589_410 Hb_004392_030 Hb_004392_030 Hb_012539_080--Hb_004392_030 Hb_043935_010 Hb_043935_010 Hb_012539_080--Hb_043935_010 Hb_006147_020 Hb_006147_020 Hb_012539_080--Hb_006147_020 Hb_002835_050 Hb_002835_050 Hb_012539_080--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_012539_080--Hb_000907_130 Hb_097783_030 Hb_097783_030 Hb_005155_030--Hb_097783_030 Hb_005155_030--Hb_002835_050 Hb_005155_030--Hb_000907_130 Hb_003030_050 Hb_003030_050 Hb_005155_030--Hb_003030_050 Hb_005155_030--Hb_002740_060 Hb_001300_240 Hb_001300_240 Hb_114893_010--Hb_001300_240 Hb_002122_070 Hb_002122_070 Hb_114893_010--Hb_002122_070 Hb_039435_020 Hb_039435_020 Hb_114893_010--Hb_039435_020 Hb_004242_200 Hb_004242_200 Hb_114893_010--Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_114893_010--Hb_010381_080 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.310485 0.768189 43.1883 38.2955 0.0983725 0.030284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0306517 0.0844211 0.0230496 20.4409 105.448

CAGE analysis