Hb_113444_010

Information

Type -
Description -
Location Contig113444: 40-557
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113444_010 0.0 - - -
2 Hb_001959_230 0.0092207445 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
3 Hb_000429_060 0.0181158112 - - conserved hypothetical protein [Ricinus communis]
4 Hb_174245_020 0.0298025528 - - -
5 Hb_069877_010 0.0354854899 - - chaperone protein DNAj, putative [Ricinus communis]
6 Hb_135811_030 0.040127887 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_001761_110 0.0919956395 - - Contains similarity to Cf-2.2 gene gb
8 Hb_131101_010 0.0963611062 - - -
9 Hb_014720_060 0.1116165605 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
10 Hb_000441_010 0.1123383276 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_002545_030 0.1172472376 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_086922_010 0.1222000887 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
13 Hb_007632_150 0.139305139 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000964_160 0.1583925577 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
15 Hb_007245_010 0.1617946874 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
16 Hb_043295_010 0.1618948074 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_001049_080 0.2478487404 - - -
18 Hb_003897_020 0.3100327024 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
19 Hb_000392_200 0.3166220858 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
20 Hb_120820_010 0.3206094082 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]

Gene co-expression network

sample Hb_113444_010 Hb_113444_010 Hb_001959_230 Hb_001959_230 Hb_113444_010--Hb_001959_230 Hb_000429_060 Hb_000429_060 Hb_113444_010--Hb_000429_060 Hb_174245_020 Hb_174245_020 Hb_113444_010--Hb_174245_020 Hb_069877_010 Hb_069877_010 Hb_113444_010--Hb_069877_010 Hb_135811_030 Hb_135811_030 Hb_113444_010--Hb_135811_030 Hb_001761_110 Hb_001761_110 Hb_113444_010--Hb_001761_110 Hb_001959_230--Hb_174245_020 Hb_001959_230--Hb_000429_060 Hb_001959_230--Hb_069877_010 Hb_001959_230--Hb_135811_030 Hb_001959_230--Hb_001761_110 Hb_000429_060--Hb_069877_010 Hb_000429_060--Hb_135811_030 Hb_000429_060--Hb_174245_020 Hb_086922_010 Hb_086922_010 Hb_000429_060--Hb_086922_010 Hb_174245_020--Hb_001761_110 Hb_174245_020--Hb_069877_010 Hb_131101_010 Hb_131101_010 Hb_174245_020--Hb_131101_010 Hb_069877_010--Hb_135811_030 Hb_069877_010--Hb_086922_010 Hb_135811_030--Hb_174245_020 Hb_135811_030--Hb_086922_010 Hb_001761_110--Hb_131101_010 Hb_014720_060 Hb_014720_060 Hb_001761_110--Hb_014720_060 Hb_000441_010 Hb_000441_010 Hb_001761_110--Hb_000441_010 Hb_002545_030 Hb_002545_030 Hb_001761_110--Hb_002545_030 Hb_000964_160 Hb_000964_160 Hb_001761_110--Hb_000964_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101653 0 0.131552 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis