Hb_113766_010

Information

Type -
Description -
Location Contig113766: 42-942
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G193800g
description hypothetical protein
nr
ID AAA34099.1
description plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
swissprot
ID P22180
description Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1
trembl
ID T1NFI9
description Uncharacterized protein OS=Triticum urartu PE=3 SV=1
Gene Ontology
ID GO:0005886
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04109: 18-672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113766_010 0.0 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
2 Hb_000103_300 0.0902244491 - - PREDICTED: perakine reductase-like [Jatropha curcas]
3 Hb_002391_240 0.0955588463 - - conserved hypothetical protein [Ricinus communis]
4 Hb_026198_020 0.0979717637 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
5 Hb_000152_570 0.1016350218 - - 21 kDa protein precursor, putative [Ricinus communis]
6 Hb_002284_060 0.1028580628 - - sugar transporter, putative [Ricinus communis]
7 Hb_002750_040 0.1071830023 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
8 Hb_002374_510 0.1087517197 - - Esterase precursor, putative [Ricinus communis]
9 Hb_000193_070 0.1095676506 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
10 Hb_141194_020 0.1114326451 - - carbohydrate transporter, putative [Ricinus communis]
11 Hb_006992_010 0.1114983954 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_009122_010 0.1182537972 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_000963_120 0.1193830393 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
14 Hb_012395_060 0.1195786281 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
15 Hb_001410_080 0.1196209153 - - ring finger protein, putative [Ricinus communis]
16 Hb_169077_030 0.1259561173 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
17 Hb_007370_010 0.1281061119 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
18 Hb_003376_140 0.1289401124 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
19 Hb_004957_050 0.1291380497 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
20 Hb_003052_080 0.1357254204 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]

Gene co-expression network

sample Hb_113766_010 Hb_113766_010 Hb_000103_300 Hb_000103_300 Hb_113766_010--Hb_000103_300 Hb_002391_240 Hb_002391_240 Hb_113766_010--Hb_002391_240 Hb_026198_020 Hb_026198_020 Hb_113766_010--Hb_026198_020 Hb_000152_570 Hb_000152_570 Hb_113766_010--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_113766_010--Hb_002284_060 Hb_002750_040 Hb_002750_040 Hb_113766_010--Hb_002750_040 Hb_000103_300--Hb_000152_570 Hb_000193_070 Hb_000193_070 Hb_000103_300--Hb_000193_070 Hb_000103_300--Hb_002284_060 Hb_000103_300--Hb_002391_240 Hb_006154_010 Hb_006154_010 Hb_000103_300--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000103_300--Hb_169077_030 Hb_002391_240--Hb_000193_070 Hb_002391_240--Hb_000152_570 Hb_002391_240--Hb_002284_060 Hb_007370_010 Hb_007370_010 Hb_002391_240--Hb_007370_010 Hb_026198_020--Hb_002750_040 Hb_026198_020--Hb_002391_240 Hb_090390_010 Hb_090390_010 Hb_026198_020--Hb_090390_010 Hb_000392_490 Hb_000392_490 Hb_026198_020--Hb_000392_490 Hb_006992_010 Hb_006992_010 Hb_026198_020--Hb_006992_010 Hb_000152_570--Hb_000193_070 Hb_000152_570--Hb_002284_060 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_000152_570--Hb_007370_010 Hb_002284_060--Hb_000193_070 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_003894_180 Hb_001404_070 Hb_001404_070 Hb_002750_040--Hb_001404_070 Hb_009122_010 Hb_009122_010 Hb_002750_040--Hb_009122_010 Hb_002750_040--Hb_002391_240 Hb_001269_580 Hb_001269_580 Hb_002750_040--Hb_001269_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0543655 4.94003 9.31994 53.2038 0.710386 0.92213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.19899 0.469177 0 10.6403 33.6481

CAGE analysis