Hb_113823_010

Information

Type -
Description -
Location Contig113823: 534-1360
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113823_010 0.0 - - -
2 Hb_010979_010 0.1777586758 - - -
3 Hb_001214_170 0.2294623143 - - pyruvate kinase family protein [Medicago truncatula]
4 Hb_000123_100 0.2452895488 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
5 Hb_004524_070 0.2464875267 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
6 Hb_000146_060 0.259984927 - - -
7 Hb_099990_030 0.2701522029 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_007805_020 0.2812431443 - - -
9 Hb_167508_010 0.2833726254 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
10 Hb_118346_010 0.2874047967 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
11 Hb_161023_010 0.2972723201 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
12 Hb_012107_070 0.3026789172 - - -
13 Hb_001944_030 0.3065669853 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
14 Hb_028848_030 0.3083608403 - - -
15 Hb_004330_030 0.3170431869 - - -
16 Hb_160233_020 0.3188001939 - - -
17 Hb_131949_010 0.3265545947 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
18 Hb_034569_020 0.3293523304 - - -
19 Hb_184798_040 0.3327466475 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_070745_010 0.3330323805 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]

Gene co-expression network

sample Hb_113823_010 Hb_113823_010 Hb_010979_010 Hb_010979_010 Hb_113823_010--Hb_010979_010 Hb_001214_170 Hb_001214_170 Hb_113823_010--Hb_001214_170 Hb_000123_100 Hb_000123_100 Hb_113823_010--Hb_000123_100 Hb_004524_070 Hb_004524_070 Hb_113823_010--Hb_004524_070 Hb_000146_060 Hb_000146_060 Hb_113823_010--Hb_000146_060 Hb_099990_030 Hb_099990_030 Hb_113823_010--Hb_099990_030 Hb_034569_020 Hb_034569_020 Hb_010979_010--Hb_034569_020 Hb_007805_020 Hb_007805_020 Hb_010979_010--Hb_007805_020 Hb_184798_040 Hb_184798_040 Hb_010979_010--Hb_184798_040 Hb_009742_010 Hb_009742_010 Hb_010979_010--Hb_009742_010 Hb_004899_280 Hb_004899_280 Hb_010979_010--Hb_004899_280 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_059301_010 Hb_059301_010 Hb_000123_100--Hb_059301_010 Hb_000123_100--Hb_160233_020 Hb_004800_050 Hb_004800_050 Hb_000123_100--Hb_004800_050 Hb_004640_040 Hb_004640_040 Hb_000123_100--Hb_004640_040 Hb_000123_100--Hb_001214_170 Hb_004524_070--Hb_099990_030 Hb_000589_370 Hb_000589_370 Hb_004524_070--Hb_000589_370 Hb_004524_070--Hb_167508_010 Hb_002234_230 Hb_002234_230 Hb_004524_070--Hb_002234_230 Hb_003292_060 Hb_003292_060 Hb_004524_070--Hb_003292_060 Hb_004330_030 Hb_004330_030 Hb_000146_060--Hb_004330_030 Hb_004939_020 Hb_004939_020 Hb_000146_060--Hb_004939_020 Hb_012107_070 Hb_012107_070 Hb_000146_060--Hb_012107_070 Hb_003362_060 Hb_003362_060 Hb_000146_060--Hb_003362_060 Hb_000146_060--Hb_001214_170 Hb_000787_010 Hb_000787_010 Hb_099990_030--Hb_000787_010 Hb_004968_010 Hb_004968_010 Hb_099990_030--Hb_004968_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_099990_030--Hb_161023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155856 0.081063 0.0727512 0 0.0895186 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis