Hb_113853_010

Information

Type -
Description -
Location Contig113853: 6484-10042
Sequence    

Annotation

kegg
ID rcu:RCOM_1120050
description 50S ribosomal protein L2, putative
nr
ID XP_002533864.1
description 50S ribosomal protein L2, putative [Ricinus communis]
swissprot
ID P92812
description 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2
trembl
ID B9T6J5
description 50S ribosomal protein L2, putative OS=Ricinus communis GN=RCOM_1120050 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04155: 7245-9993 , PASA_asmbl_04156: 6273-9964 , PASA_asmbl_04157: 6266-8542
cDNA
(Sanger)
(ID:Location)		 022_C24.ab1: 6469-9994 , 040_J12.ab1: 9251-9964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113853_010 0.0 - - 50S ribosomal protein L2, putative [Ricinus communis]
2 Hb_065525_080 0.0698737504 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
3 Hb_002876_300 0.0700945803 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_005494_010 0.0727137711 - - catalytic, putative [Ricinus communis]
5 Hb_093666_010 0.0770172128 - - BnaC05g06620D [Brassica napus]
6 Hb_009476_130 0.0790475403 - - hypothetical protein VITISV_005430 [Vitis vinifera]
7 Hb_021374_030 0.0820566517 - - hypothetical protein RCOM_0351490 [Ricinus communis]
8 Hb_001623_270 0.0832563876 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_030414_040 0.0857159475 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
10 Hb_000304_070 0.0859437842 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
11 Hb_000035_090 0.086008494 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
12 Hb_002126_030 0.0868620307 - - ferrochelatase, putative [Ricinus communis]
13 Hb_010863_050 0.0875244386 - - OTU domain-containing protein 6B, putative [Ricinus communis]
14 Hb_001541_050 0.0913946378 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
15 Hb_033312_010 0.0916162776 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000826_030 0.0924703131 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
17 Hb_001892_030 0.0925372744 - - PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]
18 Hb_000291_180 0.0927620681 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
19 Hb_001882_010 0.092875696 - - -
20 Hb_183433_010 0.0943472822 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_113853_010 Hb_113853_010 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030 Hb_065525_080--Hb_093666_010 Hb_001221_440 Hb_001221_440 Hb_065525_080--Hb_001221_440 Hb_001623_270 Hb_001623_270 Hb_065525_080--Hb_001623_270 Hb_000375_390 Hb_000375_390 Hb_065525_080--Hb_000375_390 Hb_183433_010 Hb_183433_010 Hb_065525_080--Hb_183433_010 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030 Hb_005494_010--Hb_001623_270 Hb_005494_010--Hb_005946_040 Hb_000304_070 Hb_000304_070 Hb_005494_010--Hb_000304_070 Hb_001109_050 Hb_001109_050 Hb_005494_010--Hb_001109_050 Hb_000227_170 Hb_000227_170 Hb_005494_010--Hb_000227_170 Hb_093666_010--Hb_030414_040 Hb_093666_010--Hb_001623_270 Hb_093666_010--Hb_021374_030 Hb_093666_010--Hb_183433_010 Hb_000163_260 Hb_000163_260 Hb_009476_130--Hb_000163_260 Hb_009476_130--Hb_012438_030 Hb_000186_300 Hb_000186_300 Hb_009476_130--Hb_000186_300 Hb_001504_010 Hb_001504_010 Hb_009476_130--Hb_001504_010 Hb_000155_170 Hb_000155_170 Hb_009476_130--Hb_000155_170 Hb_006913_020 Hb_006913_020 Hb_021374_030--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_021374_030--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56234 2.14694 3.99473 2.45795 1.31625 1.62685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35543 2.14033 0.772514 2.02194 3.76822

CAGE analysis