Hb_113951_010

Information

Type -
Description -
Location Contig113951: 9286-12132
Sequence    

Annotation

kegg
ID rcu:RCOM_0866620
description Casbene synthase, chloroplast precursor, putative (EC:4.2.3.8)
nr
ID KDP37851.1
description hypothetical protein JCGZ_06358 [Jatropha curcas]
swissprot
ID B9S1N2
description Probable terpene synthase 8 OS=Ricinus communis GN=TPS8 PE=3 SV=1
trembl
ID A0A067KNP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06358 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04166: 9332-11377 , PASA_asmbl_04167: 11528-12233
cDNA
(Sanger)
(ID:Location)		 013_I13.ab1: 11528-12233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113951_010 0.0 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
2 Hb_000178_110 0.1567628581 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000784_130 0.1581645737 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
4 Hb_000699_120 0.1628309067 - - DNA-binding family protein [Populus trichocarpa]
5 Hb_015974_010 0.168918829 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
6 Hb_012662_010 0.1700789495 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
7 Hb_000130_390 0.1707970676 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
8 Hb_010098_080 0.1724634054 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
9 Hb_030982_040 0.1750983892 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_030765_020 0.1776958602 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_001102_010 0.1790961529 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
12 Hb_012725_110 0.1803829826 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
13 Hb_005867_040 0.1820425542 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
14 Hb_003018_180 0.1860666433 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
15 Hb_002298_040 0.1870571811 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
16 Hb_001514_190 0.1884076254 - - -
17 Hb_011457_100 0.1892611628 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002221_080 0.1920984323 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
19 Hb_001478_050 0.1928038493 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
20 Hb_060668_010 0.1946065729 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_113951_010 Hb_113951_010 Hb_000178_110 Hb_000178_110 Hb_113951_010--Hb_000178_110 Hb_000784_130 Hb_000784_130 Hb_113951_010--Hb_000784_130 Hb_000699_120 Hb_000699_120 Hb_113951_010--Hb_000699_120 Hb_015974_010 Hb_015974_010 Hb_113951_010--Hb_015974_010 Hb_012662_010 Hb_012662_010 Hb_113951_010--Hb_012662_010 Hb_000130_390 Hb_000130_390 Hb_113951_010--Hb_000130_390 Hb_000836_500 Hb_000836_500 Hb_000178_110--Hb_000836_500 Hb_029584_140 Hb_029584_140 Hb_000178_110--Hb_029584_140 Hb_007120_070 Hb_007120_070 Hb_000178_110--Hb_007120_070 Hb_012725_110 Hb_012725_110 Hb_000178_110--Hb_012725_110 Hb_012799_060 Hb_012799_060 Hb_000178_110--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_000178_110--Hb_000580_170 Hb_003018_180 Hb_003018_180 Hb_000784_130--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_000784_130--Hb_002298_040 Hb_002890_220 Hb_002890_220 Hb_000784_130--Hb_002890_220 Hb_000753_260 Hb_000753_260 Hb_000784_130--Hb_000753_260 Hb_000784_130--Hb_000130_390 Hb_004545_150 Hb_004545_150 Hb_000784_130--Hb_004545_150 Hb_000699_120--Hb_000178_110 Hb_000077_410 Hb_000077_410 Hb_000699_120--Hb_000077_410 Hb_000699_120--Hb_012725_110 Hb_004705_030 Hb_004705_030 Hb_000699_120--Hb_004705_030 Hb_000699_120--Hb_000836_500 Hb_030982_040 Hb_030982_040 Hb_015974_010--Hb_030982_040 Hb_005653_120 Hb_005653_120 Hb_015974_010--Hb_005653_120 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_004453_140 Hb_004453_140 Hb_015974_010--Hb_004453_140 Hb_000638_020 Hb_000638_020 Hb_015974_010--Hb_000638_020 Hb_010098_080 Hb_010098_080 Hb_012662_010--Hb_010098_080 Hb_012662_010--Hb_003018_180 Hb_001993_020 Hb_001993_020 Hb_012662_010--Hb_001993_020 Hb_001780_060 Hb_001780_060 Hb_012662_010--Hb_001780_060 Hb_000500_310 Hb_000500_310 Hb_012662_010--Hb_000500_310 Hb_000130_390--Hb_003018_180 Hb_000957_040 Hb_000957_040 Hb_000130_390--Hb_000957_040 Hb_000130_390--Hb_002298_040 Hb_012347_010 Hb_012347_010 Hb_000130_390--Hb_012347_010 Hb_001140_160 Hb_001140_160 Hb_000130_390--Hb_001140_160 Hb_005016_130 Hb_005016_130 Hb_000130_390--Hb_005016_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
426.249 2.88987 0 0 205.739 69.2892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
329.385 273.205 290.919 65.0047 0

CAGE analysis